Pairwise Alignments

Query, 513 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 499 a.a., ribose ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  362 bits (930), Expect = e-104
 Identities = 192/465 (41%), Positives = 299/465 (64%), Gaps = 5/465 (1%)

Query: 10  RNVEKVFPGVRALKGVNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQILVDGQA 69
           R + K+FPGV+AL  VN +++ G IHA++GENGAGKSTL+K+++G +  ++G   + G  
Sbjct: 11  RGISKIFPGVKALSNVNFTVEYGRIHAVVGENGAGKSTLMKILSGSYAPTTGTTEIAGVE 70

Query: 70  VRFSNPREAIARGIGVVHQERNLIPRFSIAENIHMEKLGAHYLKPIDYAALNRDARRWLE 129
           V+   P +A   GI +VHQE NL+P  ++AENI++ ++  H    +D  A+ R A   L+
Sbjct: 71  VQMRRPADAQKLGIRMVHQELNLVPDLTVAENIYLGRM-PHRRFLVDRQAMLRKAAAVLK 129

Query: 130 ALNLEIDPATPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETDNLFRILRRL 189
            L   IDP   + +L ++Q QLVEIAK+ S   R+++LDEPT+SL+  ET  LF ILR++
Sbjct: 130 ELEAAIDPKARLGDLPISQQQLVEIAKSYSADPRIIVLDEPTSSLSEHETTALFSILRKM 189

Query: 190 RDDGASLVFVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRLMIGRAESGGG 249
           +  G +++++SH+L+EVLDI D VT+LRDG +  ++R   G+   +++RLM+GR E    
Sbjct: 190 KSQGIAIIYISHRLKEVLDIADDVTILRDG-SMIDTRPAAGITAAEMIRLMVGR-EVANV 247

Query: 250 WRKRAVEHNPMVLELEGVSTAIGHGDVSLSVRKGEIVGLYGLVGAGRTELAKSIMGKFAV 309
           + K   +  P+  ++ G+S      DV   VR GEI+GL GLVGAGRTE+A++I G   +
Sbjct: 248 FPKTPSKIGPVAFKVTGLSDGEKFHDVGFDVRSGEILGLTGLVGAGRTEVAQAIFGLAPL 307

Query: 310 TSGNVRVSGRPARIRSVAEAIHDYGVGYVSEDRKGDGLILQHSVLANAGVPIWRKLSNTF 369
            +G + ++G+   I S A A+   GV YV EDRKGDG++   SV  N  +P+ R+LS   
Sbjct: 308 ATGRIEINGKAVTIGSPAAAV-KAGVAYVPEDRKGDGIVPSMSVRENISLPVLRRLSR-L 365

Query: 370 GVLSDGRIRAAVTPFLKKLEVKTPSLSQTVGNLSGGNQQKISVAKWLAADVKLLIVDEPS 429
           G +   R R     + +   +  P   + +  LSGGNQQK  +++WLAA  K+LI+DEP+
Sbjct: 366 GRIGMSRDRGLAAKYTRDFSIVPPDPERRINLLSGGNQQKAIISRWLAAGPKVLILDEPT 425

Query: 430 VGIDIKTKAYLHDLLRELADNGTAILVITSDMPEMVALADRIVVM 474
            G+D+  KA +H ++ EL   G A+++I+S++PE++ + DR+VVM
Sbjct: 426 RGVDVGAKAEIHRIIGELVAGGMAVVMISSELPEVMGVCDRVVVM 470



 Score = 94.4 bits (233), Expect = 9e-24
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 15/230 (6%)

Query: 25  VNLSLQPGSIHALLGENGAGKSTLIKVVTGVHHQSSGQILVDGQAVRFSNPREAIARGIG 84
           V   ++ G I  L G  GAG++ + + + G+   ++G+I ++G+AV   +P  A+  G+ 
Sbjct: 274 VGFDVRSGEILGLTGLVGAGRTEVAQAIFGLAPLATGRIEINGKAVTIGSPAAAVKAGVA 333

Query: 85  VVHQERN---LIPRFSIAENIHMEKLGAHYLKPIDYAALNRD----ARRWLEALNLEIDP 137
            V ++R    ++P  S+ ENI +  L    L  +    ++RD    A+   +   +  DP
Sbjct: 334 YVPEDRKGDGIVPSMSVRENISLPVL--RRLSRLGRIGMSRDRGLAAKYTRDFSIVPPDP 391

Query: 138 ATPVSELSVAQMQLVEIAKALSLQSRVLLLDEPTTSLTPSETDNLFRILRRLRDDGASLV 197
              ++ LS    Q   I++ L+   +VL+LDEPT  +       + RI+  L   G ++V
Sbjct: 392 ERRINLLSGGNQQKAIISRWLAAGPKVLILDEPTRGVDVGAKAEIHRIIGELVAGGMAVV 451

Query: 198 FVSHKLEEVLDICDRVTVLRDGENACESRSMEGLGRQDLVRLMIGRAESG 247
            +S +L EV+ +CDRV V+RDG      R+   + R DL    I    +G
Sbjct: 452 MISSELPEVMGVCDRVVVMRDG------RASSPIARGDLTEERIMALATG 495