Pairwise Alignments

Query, 336 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 330 a.a., autoinducer 2 ABC transporter permease LsrD from Escherichia coli ECRC101

 Score =  172 bits (435), Expect = 1e-47
 Identities = 100/305 (32%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 24  RIMASWEVLLLGVAILIFIANSLASPYFLNAWNLSDATFNFTEKAIIAFAMALLIIAGEI 83
           RI   WE+ L  + ++  ++    +P  L+   L  +T +F    I+A  + ++I++G I
Sbjct: 2   RIRYGWELALAALLVIEIVSFGAINPRMLDLNMLLFSTSDFICIGIVALPLTMVIVSGGI 61

Query: 84  DLSVAAIIALASTAMGAAVQMGVGTPGLVAIGIGTGLFCGAFNGFLVAGLKLPSIVVTIG 143
           D+S  + I L + A+G   Q GV  P  + + +  G  CG  N  L+   K+  +V+T+G
Sbjct: 62  DISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTKVNPLVITLG 121

Query: 144 TMSLFRGISYMV------LGDQAYGKYPADFAYFGQGYVFWVISFEFVLFIVMAVLFAIL 197
           T+ LF G + ++       G +  G +P  F  F    V   +    ++F++  ++F + 
Sbjct: 122 TLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDVLG-LPVPLIIFLICLLVFWLW 180

Query: 198 LHATNFGRQVYVIGTNPFAARFSGIPVERVKFILFLLTGLMSGIAAVCLTSRLGSTRPSI 257
           LH T+ GR V++IG +P  A +S IPV R    L+ +TGL S +AAV L S  GS R  +
Sbjct: 181 LHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAVAAVLLVSYFGSARSDL 240

Query: 258 AQGWELEVVTMVVLGGVSILGGSGTIAGVVIAAFVMGLVTFGLGLLNVPGIVMSIFVGLL 317
              + +  +T VVLGG +I GGSG I G  IA  ++G +  GL +  VP  V S   G L
Sbjct: 241 GASFLMPAITAVVLGGANIYGGSGAIIGTAIAVLLVGYLQQGLQMAGVPNQVSSALSGAL 300

Query: 318 LIITI 322
           LI+ +
Sbjct: 301 LIVVV 305