Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 305 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens GW456-L13

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 17/300 (5%)

Query: 13  ALSAALSVAGLGSIAEAADV-KIALVVKSLGNGFFEAANKGAQEAAKDLGG-VEIIYTG- 69
           A SAAL V+   + AE  +  K+ALV+KSL N FF     GA+   KD  G  ++I  G 
Sbjct: 4   AASAALPVSS--AFAETTEKPKVALVMKSLANEFFLTMEDGAKAYQKDHSGEFDLISNGI 61

Query: 70  PTSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPEGR 129
              T   GQ  ++  +I   V+A+ I+  D  A+VP +KKA   GI VI+ D+ + P   
Sbjct: 62  KDETDTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGITVINIDNQLDP--A 119

Query: 130 ILQLNPSSNALIG-------KMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMKKQ 182
           +++    +   +G       ++     A  L+ G  +  I+   +T+TN        K  
Sbjct: 120 VVKSKNINVPFVGPDNRKGARLVGDYLAKQLKAG-DEVGIIEGVSTTTNAQQRTAGFKDA 178

Query: 183 LKDFPGLNLVTTVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKI 242
           + +   + +V+   GD   DK  + A  +LS  P  K ++A      + A  AV+ AGK 
Sbjct: 179 M-EAAQIKVVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAVSAVRAAGKA 237

Query: 243 GQVFVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGE-ADGKPGSEIE 301
           G+V V G    + +   +K G     A            + A +++KGE  DG     IE
Sbjct: 238 GKVQVVGYDNINAIQPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDGGANGVIE 297