Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score =  102 bits (255), Expect = 1e-26
 Identities = 93/305 (30%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 8   LTSVLALSAALSVAGLGSIA--EAADVKIALVVKSLGNGFFEAANKGAQEAAKD-LGGVE 64
           L +V  L+AA +   L S    +AA  K+ LV+KSL N FF     GA+   K+     +
Sbjct: 9   LLAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFD 68

Query: 65  IIYTG-PTSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSG 123
           +I  G    T    QI+++N +I   V+AI I+  D  A+V  LKKA+  GIKV++ D+ 
Sbjct: 69  MITNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNR 128

Query: 124 VAPE---GRILQL------NPSSNALIGK-MCLQLAAAHLEGGKGDFAILSATTTSTNQN 173
           + P+    + L +      N   + L+G  +  QLA+    G      I+    T+TN  
Sbjct: 129 LDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVG------IIEGVPTTTNAQ 182

Query: 174 VWIGEMKKQLKDFPGLNLVTTVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAAS 233
                 K  + D  G+ +V+T  G+   D+  + A  +LS  P++K ++A      L A 
Sbjct: 183 QRTAGYKDAM-DAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAV 241

Query: 234 QAVKDAGKIGQVFVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGE-A 292
            AV+ AGK G+V V G      +   ++ G     A            Q A +LVKGE  
Sbjct: 242 SAVRAAGKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEKV 301

Query: 293 DGKPG 297
           D K G
Sbjct: 302 DSKDG 306