Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 328 a.a., Autoinducer 2-binding protein LsrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  121 bits (303), Expect = 3e-32
 Identities = 97/305 (31%), Positives = 152/305 (49%), Gaps = 12/305 (3%)

Query: 8   LTSVLALSAALSVAGLGSIAEAADVKIALVVKSLGNGFFEAANKGAQEAAKDLGGVEIIY 67
           + S L L AAL  A L    +AA+  +  + K  G  +F    +G  EA K  G V    
Sbjct: 10  MVSSLLLGAALISAPL----QAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFG-VNASQ 64

Query: 68  TGPTSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPE 127
            GP+ST A  Q+++I  LIA+ V+AI I  ND + + P  KKA   GI V++ +S   P 
Sbjct: 65  VGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPS 124

Query: 128 GRILQLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMKKQLKD-F 186
                +    N       ++  A  + GGKG + I   + T    N+W   + K  K+ +
Sbjct: 125 AN-WDIEIIDNEKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHY 182

Query: 187 PGLNLVTT-VYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKIGQV 245
           P ++ VT  +   +  D S R    L+ + P++K +V+  + G + A +AVK+     +V
Sbjct: 183 PDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKV 242

Query: 246 FVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADGKPGSEIEAGRM 305
            V G+ +PS+ A  IKSG   E   ++P   GY+   +A  L+KGE + KPG E++   +
Sbjct: 243 AVYGMMIPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGE-EIKPGLEMQ--NL 299

Query: 306 GKIKV 310
           GK  V
Sbjct: 300 GKADV 304