Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 340 a.a., Autoinducer 2-binding protein LsrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  195 bits (496), Expect = 1e-54
 Identities = 107/304 (35%), Positives = 180/304 (59%), Gaps = 5/304 (1%)

Query: 12  LALSAALSVAGLGSIAEAADVKIALVVKSLGNGFFEAANKGAQEAAKDLGGVEIIYTGPT 71
           +AL + L +A +    +AA+ +IA + K +G GFF +   GAQ+A K+LG V++ Y GPT
Sbjct: 9   IALLSVLGIAAISMNVQAAE-RIAFIPKLVGVGFFTSGGNGAQQAGKELG-VDVTYDGPT 66

Query: 72  STTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPEGRIL 131
             +  GQ+++IN+ + QG +AI +SA  PD + PALK+A QRG++V++WDS   PE R  
Sbjct: 67  EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSY 126

Query: 132 QLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMKKQL-KDFPGLN 190
            +N  + A +G M + +AA  +   K   A   ++ T T QN W+ E K ++ K+ PG  
Sbjct: 127 YINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTEQNQWVKEAKAKIAKEHPGWE 186

Query: 191 LVTTVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKIGQVFVTGL 250
           +VTT +G + A KS + A+G+L +  ++  I+AP    + AA+QA ++  K  +V + G 
Sbjct: 187 IVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENL-KNDKVAIVGF 245

Query: 251 GLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADGKPGSEIEAGRMGKIKV 310
             P+ M   ++ G  KEF +W+ +  G  +  +A  L+K +   K G +++   +G+++V
Sbjct: 246 STPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLK-KGSMKTGDKLDIQGVGQVEV 304

Query: 311 GENS 314
             NS
Sbjct: 305 SPNS 308