Pairwise Alignments

Query, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score = 97.1 bits (240), Expect = 5e-25
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 13/294 (4%)

Query: 5   RRTLTSVLALSAALSVAGLGSIAEAADVKIALVVKSLGNGFFEAANKGAQEAAKDLGGVE 64
           RR  ++ LA +          + +AA+  IALV  +    FF   N+GA++AAK+ G   
Sbjct: 6   RRYFSAALAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKEAGVKL 65

Query: 65  IIYTGPTSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGV 124
           +I+       A+     I + I Q VD IA+ A D + ++PA+K+AA   I V++ D+ +
Sbjct: 66  VIFNANNDPAAQNS--AIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDA-I 122

Query: 125 APEG----RILQLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMK 180
            PEG    +I   N  + A +GK  L    + + GGK    ++ A   S  QN+     +
Sbjct: 123 LPEGPQKAQIGVDNGKAGADMGKFFLDYVKSDM-GGKAKIGVVGALN-SFIQNIRQKGFE 180

Query: 181 KQLKDFPGLNLVTTVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAG 240
             +KD  G+     V G ++ D +   A+ L++  P++  I A     +L A  AV+   
Sbjct: 181 DTIKDKTGITTAGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQS 240

Query: 241 KIGQVFVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADG 294
           K   + V G  L  +    I +G        +P ++G +A     + +K  ADG
Sbjct: 241 KQKDIKVFGWDLTKQAITGIDAGYVAGVIQQDPAEMGAAAV----KALKTVADG 290