Pairwise Alignments

Query, 278 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 343 a.a., Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  231 bits (590), Expect = 1e-65
 Identities = 126/269 (46%), Positives = 186/269 (69%), Gaps = 9/269 (3%)

Query: 3   KPILDVENLRIRYGGSA--TEAVRGISFTLGRER-LGIVGESGSGKSTVGRALLRLLPSA 59
           +P+L+V+NLR  +   A    +V G+S+T+   R LG+VGESG GKS    ++LRL+P+ 
Sbjct: 14  EPLLEVDNLRTHFHTLAGVVRSVDGVSYTVRAGRTLGVVGESGCGKSVTALSILRLVPTP 73

Query: 60  T---ITADRLDFEGIDLLALSEKEMLKVRGRRMSMILQDPKFSLNPIRRVGDQVTETYLR 116
               + A RL   G DL+ LSE+EM ++RG R+SMI Q+P  SLNP+  VG Q+ ET   
Sbjct: 74  PGRHMGAVRL--RGTDLMQLSEREMRQIRGNRISMIFQEPMTSLNPVLTVGRQIAETVQL 131

Query: 117 HFKASKSQAREKALAMLDAVKIRDAERVYEQYPHEISGGMGQRVMIAMMLLADPDLVIAD 176
           H KAS++ A ++A+ ML  V+I + ER   +YPH++SGGM QRVMIA+ L  +P+++IAD
Sbjct: 132 HQKASRADALKRAVEMLRVVQIPEPERRVNEYPHQLSGGMRQRVMIALALACNPEVLIAD 191

Query: 177 EPTSALDVTVRLQVLNILDGLVRDRGIGLIMISHDLNLVRNFCDRVLIMYAGRVVETLAA 236
           EPT+ALDVT++ Q+L+++  L ++ G+G++MI+HDL +V   CDRV++MYAGR VE    
Sbjct: 192 EPTTALDVTIQAQILDLIKRLQKELGMGVVMITHDLGVVAESCDRVVVMYAGRKVEEADV 251

Query: 237 RDL-DQAQHPYTRGLLAAQPRIGGSRSPL 264
            DL D+  HPYTR L+A+ P +  + + L
Sbjct: 252 IDLFDRPLHPYTRALMASMPAMNTASTRL 280