Pairwise Alignments

Query, 252 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  207 bits (527), Expect = 4e-58
 Identities = 123/249 (49%), Positives = 155/249 (62%), Gaps = 11/249 (4%)

Query: 7   TRDLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDFWTGDIL 66
           TR  S    S   A K + SVSF +  GEC GLVGESGSGK+TV + +        G I 
Sbjct: 321 TRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGSGKTTVSKILMRAVRPDEGSIT 380

Query: 67  -------IDGRSVRDIPLIERCRMLQMVFQDPYGSLHPRQSVRTVLSESLAIHKLGD--- 116
                  ID  + +D  L E    +QMVFQDP  SL PR +V  +LSE L IH  GD   
Sbjct: 381 FHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPRMTVGNILSEPLEIHGRGDAKY 440

Query: 117 REERMRKVITDVGLPVSFLDRFPHQLSGGQRQRVAIARALILEPSLLLLDEPTSALDVSV 176
           R E++R ++  +GL  S L+R+PH  SGGQRQR+ IARAL L P LL+ DEP SALDVSV
Sbjct: 441 RAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARALALGPELLICDEPVSALDVSV 500

Query: 177 QAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITEILPREAIAGNGATH 236
           QA+ILNLL+ L+++ G TY+ ++H+LAVVD+M DR AVM  G I E+ PRE I      H
Sbjct: 501 QAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIVELAPRE-ILMRSPIH 559

Query: 237 PYARELIGA 245
           PY + L+ A
Sbjct: 560 PYTKSLLAA 568



 Score =  136 bits (342), Expect = 1e-36
 Identities = 89/263 (33%), Positives = 139/263 (52%), Gaps = 31/263 (11%)

Query: 9   DLSITFGSGHTALKVLPSVSFRVEPGECFGLVGESGSGKSTVLRCVSMLNDFW---TGDI 65
           +L ++F      +  +   S R+ PG+   LVGESGSGKS + + +  ++       G +
Sbjct: 12  NLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTARVNGRV 71

Query: 66  LI------------------DGRSVRDIPLIERCRMLQMVFQDPYGSLHPRQSVRTVLSE 107
           L                   DGR +R I    R   + ++FQ+P  S  P  ++   + E
Sbjct: 72  LFTDPENAAAGPIDLLQLPKDGREIRSI----RGNRIGLIFQEPMTSFSPLHTIGNQIDE 127

Query: 108 SLAIHKL---GDREERMRKVITDVGL--PVSFLDRFPHQLSGGQRQRVAIARALILEPSL 162
           +L IH +    +R E+M + +  VG   P   ++ +P +LSGG RQR  IA ALI  P+L
Sbjct: 128 ALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICRPAL 187

Query: 163 LLLDEPTSALDVSVQAEILNLLQRLREERGFTYIMVTHDLAVVDHMCDRFAVMLRGEITE 222
           L+ DEPT+ALDV++QA+IL LL+ L+     + +++THDL VV ++ D  AV+ +GEI E
Sbjct: 188 LIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGEIME 247

Query: 223 ILPREAIAGNGATHPYARELIGA 245
               + I      HPY + L+ A
Sbjct: 248 AGTVDDIF-KAPGHPYLKGLMAA 269