Pairwise Alignments

Query, 531 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  478 bits (1230), Expect = e-139
 Identities = 244/510 (47%), Positives = 329/510 (64%), Gaps = 3/510 (0%)

Query: 21  LPGGSFAAAEEPVSGGTLKIVYFPEPTQLVAINTSAGGPQFIGSKIYDGLLTYDYELSPK 80
           L  G  A A  P   GTL ++   EPT LV I   A     + +K+ +GLL YDY+++P+
Sbjct: 19  LAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLKYDYDVNPQ 78

Query: 81  PSLAKEWSVSADGLEYVFHLQPNAKFHDGKPVTSADVEFSILRLKEAHPRGRATFANVES 140
           P LA +W +S DGL Y F L+   K+HDGK  TSADV +SI  LK+ HPRGR TFAN+ +
Sbjct: 79  PQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELLKKIHPRGRNTFANLTA 138

Query: 141 IDTSNPLVAKVKLSKPAPGLITALASSESPVVPKHIFETFKPTDNPKPAQIIGSGPFVLK 200
           IDT +   A ++LSKPAP LI AL ++E+P+VPKHI+E   P +NP     IG+GPF  K
Sbjct: 139 IDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKFK 198

Query: 201 EWVPGSHILLEKNANYWDAPRPYLDRVIIRLINDAGARAAALETGEGDIG-PNPVALADL 259
           EWV GSHI+ E+N +YWD P+P++D++I+R + D  A A A ETG  D+G   PV LADL
Sbjct: 199 EWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVPLADL 258

Query: 260 ERLKSIPTLKVDDRIYAYAGQQNQLVINLENDYLKELKVRQAIAHAIDVPALIDTVLYGY 319
           ERLK +P L+ + +  +Y+    +L  NL+N+Y K  KVRQA+AHAID   ++  V YGY
Sbjct: 259 ERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGY 318

Query: 320 AVPSPTPISPGLAKFHNPDIGFAKFDVALAEKLLDEAGFPRKDGGKRFKLRVTTNPFNPQ 379
              S +PI+PGL  FH+P      FDV  A  LLDEAGFP+K GG RF + +  NP    
Sbjct: 319 GQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSVPLDFNPIGAD 378

Query: 380 --TYSDFIAQALSKIGIEADIQKFDFGTYVKVVYTDRAWDLSVESLSNTFDPTAGVQRVY 437
               +D++  AL++IGI   ++  D   ++K +YTDR +  +    SN FDPT GVQR+Y
Sbjct: 379 GPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTVGVQRLY 438

Query: 438 WSKNFKIGLPFSNASHYANPEVDRLLEAAAVEPDIEKRAAFFKEFQAVVAKDLPVINLVS 497
           WSKNF  G+PFSN +HY NP VD+LLE AAVE D  KR   FK+FQ  VA+D+P +NL  
Sbjct: 439 WSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQDTVARDVPDLNLYQ 498

Query: 498 PIQPVVGSVRIKDYATGAEGLSGNLAKAWV 527
           P+   + + R+ D++  A+G+  NLA  WV
Sbjct: 499 PVFITIANQRVHDHSLTADGVESNLADVWV 528