Pairwise Alignments

Query, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  630 bits (1626), Expect = 0.0
 Identities = 313/533 (58%), Positives = 391/533 (73%), Gaps = 7/533 (1%)

Query: 9   RRGFLLASVALGVVSLPG------LKLNAAEPASGGTATLLISSEPPVLTTIAHTAYNSV 62
           RR FL    +LGV +L G          A  P  GGT T+LI  EPP LTTIAH+A +SV
Sbjct: 10  RRHFLQGGASLGVAALAGPMPAWAQAPAAGSPVRGGTLTVLIDPEPPTLTTIAHSAGSSV 69

Query: 63  YISPKVTEGLLTYDFDLNPKPLLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFS 122
            IS K TEGLLTYDFDL+P+P LA +W VSADGL+YTF LR GV+WHDGKPFTSADVA S
Sbjct: 70  LISAKTTEGLLTYDFDLSPQPQLATAWTVSADGLQYTFTLRRGVRWHDGKPFTSADVAHS 129

Query: 123 ISTIKEVHPRGRNTFLNLTAVETPNELTAVLVLSKPAPYLITALAAAETPIVPKHLYEGT 182
           I  +K+ HPRGR TF ++  V TP+  TAVLVLSKP PYL+TAL+A+E+PIVP+HLYE  
Sbjct: 130 IGLLKQYHPRGRATFSSVAEVRTPDAYTAVLVLSKPVPYLLTALSASESPIVPRHLYESG 189

Query: 183 KVTENPVNLAPIGTGPFKFKEWVRGSHIVFERNADYWDAPRPYLDRLIVRFIPDASARAI 242
           K   NP N APIGTGPF FKEWVRGSH+ +ERN DYWD P+PY+DRLIVRFIPDA+ARA 
Sbjct: 190 KADANPANNAPIGTGPFVFKEWVRGSHVTYERNPDYWDNPKPYVDRLIVRFIPDAAARAA 249

Query: 243 AIETGEIDLAPSTPVAYSDLDRLKELPSLGFDTNGYQYTNSISRVEFNLEKDVFKDVRVR 302
           AIE GE+ L+P TPV   D++RL+  P+L F+ NGYQY N++SRVEFNLE    +D+RVR
Sbjct: 250 AIEKGEVHLSPGTPVPLGDVERLRAKPNLVFEPNGYQYINNVSRVEFNLENPALQDLRVR 309

Query: 303 RAFAHVIDRNVIFNTVNFGYGATIAGPINPKLTKWFVNDLKTYPIDLKAAEALLDEAGYK 362
           +A AH I+R V+  TV +G G  I GP++P L K++V DL   P D+K AEALLD AG+ 
Sbjct: 310 QAIAHAINRQVVQKTVWYGQGQLIPGPVHPALRKFYVPDLPVLPHDVKRAEALLDAAGFV 369

Query: 363 RGADGIRFKLNLDYVP-STEAYPRGADYIRQALAKVGVDVTVRTQDFATYTKRIYTDRDF 421
           RG  G   +L L  VP S E   R A+Y++Q+L ++G++VT+ +QDFATY +R+Y DR F
Sbjct: 370 RGKAGGNLRLKLAVVPISNEGGQRTAEYLKQSLGRIGIEVTIHSQDFATYVRRVYADRAF 429

Query: 422 DFAYEGMSNLFDPTVGVQRLYWSKNFKKGVPFSNGAAYSNPKVDALLEAAAIEIDPDKRV 481
           D     MSN FDPTVG+QRLYWSKNFKKG+PFSNG+ YSNP+VD LLEAAA+EID  +R 
Sbjct: 430 DLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSNGSGYSNPEVDRLLEAAAVEIDEGRRR 489

Query: 482 AQWKEIQQILVEDVPAIDIVAAPEITIFNKRIADHTIGAEGVAGSLAFAHIAA 534
             + E Q+ +V D+P I ++A    TI ++R+  HT+ A+G+AG+LA A I A
Sbjct: 490 QAFAEFQRHIVRDLPDITLLAIDNYTIADRRVRGHTVSADGIAGNLAGAWIGA 542