Pairwise Alignments

Query, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 512 a.a., predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  140 bits (352), Expect = 1e-37
 Identities = 116/455 (25%), Positives = 196/455 (43%), Gaps = 32/455 (7%)

Query: 70  EGLLTYDFDLNPKPLLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFSISTIKEV 129
           +GL   D ++  K +LA+S+ VS DG+ YT  LR G+K+ DG  F +A V  ++    + 
Sbjct: 60  QGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDP 119

Query: 130 --HPRGRNTFLNLTAVETPNELTAVLVLSKPAPYLITALAAAETPIV-PKHLYEGTKVTE 186
             H +  N + N+   E  +  T  + L +P    I  LA   T ++ P  L +  K   
Sbjct: 120 ANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGK--- 176

Query: 187 NPVNLAPIGTGPFKFKEWVRGSHIVFERNADYWDAPRPYLDRLIVRFIPDASARAIAIET 246
             +   P+GTGP++   W +   +  ++ A YW    P LD +  R + D + RA  ++T
Sbjct: 177 -EIGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQT 235

Query: 247 GEIDLAPSTPVAYSD---LDRLKELPSLGFDTNGYQYTNSISRVEFNLEKDVFKDVRVRR 303
           GE   A   P+ Y     L++ K +  +   +   +Y      +  N+ +  F + +VR 
Sbjct: 236 GEAQFA--FPIPYEQATLLEKNKNIELMASPSIMQRY------ISMNVTQKPFDNPKVRE 287

Query: 304 AFAHVIDRNVIFNTVNFGYGATIAGPINPKLTKWFVNDLKTYPIDLKAAEALLDEAGYKR 363
           A  + I+R  +      GY     G + P +   +    K +P D   A  LL EAGY  
Sbjct: 288 ALNYAINRPALVKVAFAGYATPATGVVPPSIA--YAQSYKPWPYDPVKARELLKEAGYPN 345

Query: 364 GADGIRFKLNLDYVPSTEAYPRGADYIRQALAKVGVDVTVRTQDFATYTKRI----YTDR 419
           G     F   L    +     +   + +Q LA+VG+   V   D       +      + 
Sbjct: 346 G-----FSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKES 400

Query: 420 DFDFAYEGMS-NLFDPTVGVQRLYWSKNFKKGVPFSNGAAYSNPKVDALLEAAAIEIDPD 478
                Y G S +  +    +  L+ S+N+       N A YSN +VD  L  A    DP 
Sbjct: 401 GVRMFYTGWSASTGEADWALSPLFASQNWPP--TLFNTAFYSNKQVDDFLAQALKTNDPA 458

Query: 479 KRVAQWKEIQQILVEDVPAIDIVAAPEITIFNKRI 513
           ++   +K  Q I+ ++ P I +V    ++  +K +
Sbjct: 459 EKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNL 493