Pairwise Alignments

Query, 283 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  146 bits (369), Expect = 5e-40
 Identities = 89/258 (34%), Positives = 141/258 (54%), Gaps = 3/258 (1%)

Query: 17  KINAVGIFAFLVIFIWAMVAIFAPYLIPYPVGDIVDLDYFGPMTSDLWLGSDYLGRDVFS 76
           +++ +GI   ++I    +VA+FAP + PY            P +++ WLG+D  GRDV S
Sbjct: 23  RLSWIGIGLLVMI---VLVALFAPLIAPYDPLQQNIAYRLEPPSAEFWLGTDTYGRDVLS 79

Query: 77  RILMGARFTVGISLAAVTIACVSGVVLGMCAAVVGGWFDAMLSRFLDAVNSIPSKLFGLV 136
           R++ G R ++ +   AV IA V G  LG+ A  VGG  D +++ F+D + S P+ L GL+
Sbjct: 80  RLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLITGFVDVLLSFPTLLLGLM 139

Query: 137 VVAAVGSSIPVLIVTLSVIYTPGAYRFARALAVNVNTMDFVTVARVRGESLLYLISSEIL 196
           V A +G+S+  LI+ +++       R ARA  + +   DFV   R  G     L++  IL
Sbjct: 140 VAAMLGASLENLIIAIAITEIAPFVRIARAPTIALKQRDFVEAGRSLGYGPGRLMTVHIL 199

Query: 197 PNIIRPVLADLGVRFVFIVLLLSGLSFLGLGLQPPNADWGALVRENIGGLPFAAPAVIFP 256
           PN+I  VL    +     +   + LSF+GLG+ PP   WG+++RE    +  A    +FP
Sbjct: 200 PNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSMIREGFENILDAWWLTVFP 259

Query: 257 SLAIASLTISVNLLIDNL 274
           SLAI    ++++LL D L
Sbjct: 260 SLAILLTVLALSLLGDAL 277