Pairwise Alignments

Query, 166 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 13  YVAHRVDLIKYATLILGSRADAEDVVQEAFLKFVPEGSGNPTNLKSYLFRIVRNLALDNR 72
           + A R  +    +  +G RA A D+VQE FL+F          L +YL R   NLA+D+ 
Sbjct: 25  FQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKVEALDTYLLRCAGNLAIDHL 84

Query: 73  R--RSRQDLRERPDDTPFWGMPQDNGTPEEHALFCDEVRQMQTILAGLPVQARVALEMHR 130
           R   SR+ + E         + Q    PE+      ++++++  L  LP + R    ++R
Sbjct: 85  RSESSRERVAEAAVPVSEASLAQ---APEQAVEVDHDLQRIEATLRALPERTRQIFLLNR 141

Query: 131 FGGYNMEEIARHLGVSVAGAHR 152
             G    EIA+ + +S +   +
Sbjct: 142 IHGCKYSEIAKAMQLSQSAVEK 163