Pairwise Alignments

Query, 166 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 82.0 bits (201), Expect = 5e-21
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 6   DDKRYNAYVAHRVDLIKYATLILGSRADAEDVVQEAFLKF--VPEGSGNPTNLKSYLFRI 63
           D     A+V +R  L+K A  I G R+ AEDVVQ+AF +    P+ + +     SYLF+I
Sbjct: 11  DSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQI 70

Query: 64  VRNLALDNRRRSRQDLRERPDDTPFWGMPQDNGTPEEHALFCDEVRQMQTILAGLPVQAR 123
           VRNLA+D+ R+   +L+    +     +   N +PE   +    +  +   L  LP + R
Sbjct: 71  VRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTR 130

Query: 124 VALEMHRFGGYNMEEIARHLGVSVAGAHRLIKGSIV 159
            A EM+R  G   ++IA+ LGVS    + +I+ ++V
Sbjct: 131 YAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALV 166