Pairwise Alignments

Query, 166 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 61.6 bits (148), Expect = 1e-14
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 12  AYVAHRVDLIKYATLILGSRADAEDVVQEAFLKFV--PEGSGNPTNLKSYLFRIVRNLAL 69
           ++  H  DL+++ T  +  R  A DV QE +LK V   E +    + +S++FR+  NLA+
Sbjct: 12  SFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAI 71

Query: 70  DNRRRSRQDLRERPDDTPFWGMPQDNGTPEEHALFCDEVRQMQTILAGLPVQARVALEMH 129
           D  RR ++      D      +      PE   L  + ++ +   L  LP  AR AL ++
Sbjct: 72  DALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLN 131

Query: 130 RFGGYNMEEIARHLGVS 146
           R  G   +++A+ LGVS
Sbjct: 132 RVEGLTQKQVAQRLGVS 148