Pairwise Alignments

Query, 166 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 9   RYNA-YVAHRVDLIKYATLILGSRADAEDVVQEAFLKFVPEGSGNPT-NLKSYLFRIVRN 66
           R+N+ ++  R+ L++    ++G+ + AED++QE +L+        P  +++ ++F+  RN
Sbjct: 5   RFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARN 64

Query: 67  LALDNRRRSRQDLRERPDDTP--FWGMPQDNGTPEEHALFCDE-VRQMQTILAGLPVQAR 123
           LALD+ R  R   R   DD P           T  E A   ++ ++ +   L  L  + +
Sbjct: 65  LALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQ 124

Query: 124 VALEMHRFGGYNMEEIARHLGVSVAGAHRLIK 155
               + R  G    EIA  L VS +   + +K
Sbjct: 125 RIFILSRLHGATYLEIAEQLSVSPSTVQKELK 156