Pairwise Alignments

Query, 166 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 221 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 20  LIKYATLILGSRADAEDVVQEAFLKFVPEGSG----NPTNLKSYLFRIVRNLALDNRRRS 75
           ++  +T +L +  DA+++VQEAFLK     SG          ++L+R+V N +LD  RR+
Sbjct: 65  MLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDRLRRA 124

Query: 76  RQDLRERPDDTPFWGMPQDNGTPEEHALFCDEVRQMQTILAGLPVQARVALEMHRFGGYN 135
           R    E  D+      P   G   +  +     R + T +A +P + R AL ++ F    
Sbjct: 125 RFVAEEEADEPV---DPAPGGL--DRVVARQRERLVSTAMAEMPARQREALSLYYFSDLT 179

Query: 136 MEEIARHLGVSVAGAHRLI 154
             E AR L +S++    L+
Sbjct: 180 APEAARVLDLSLSAMEALL 198