Pairwise Alignments

Query, 331 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 29/230 (12%)

Query: 94  SVRHYAGA---AVAAASLCLVVLFIPTFSVR--LEADYQTSTAEMRTITLEDGSTVELAA 148
           ++RH  G    A  AAS+ L+V  +  +     L ADY T+  E + ITL DG+ V L +
Sbjct: 159 ALRHCRGRLKQAGVAASVVLLVAAVAGWQQAPILLADYHTAVGERQVITLTDGTRVTLNS 218

Query: 149 ASALSADFRDGRRTVKVLKGEAFFDVVPDKARPFVVEAKNVTVQVLGTAFDVDLTDGVTQ 208
           ASALS  F +  R V +  GEA F+   D +RPFVVE     VQ     F V   DG   
Sbjct: 219 ASALSVAFSEHERRVVLDAGEALFETA-DDSRPFVVETAGARVQGNAATFSVQ-RDG--H 274

Query: 209 VALAHGSVEASFRNAPPTRLVPGEMLVVDAAGAIRKENVPVEDIGGWRKGELYVVDATIG 268
           V LA G  +              E+ V   AG              W++G+L      +G
Sbjct: 275 VVLARGEAKVG----------EHELAVAADAGTQM----------AWQRGKLIFNGKPLG 314

Query: 269 SVVEQIQRYHPAWLTMADKRLAEQKVTGFYDLRDPDRALEALVEPYSGKV 318
            V+ +++RY    + ++D +LA  +V+G +DL +P+  L  L + Y  KV
Sbjct: 315 QVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKV 364