Pairwise Alignments

Query, 314 a.a., peptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  401 bits (1031), Expect = e-117
 Identities = 195/311 (62%), Positives = 248/311 (79%)

Query: 1   MIRFILSRLLMALPTIAFVSITVFALIRFIPGDPAALMLGDMAQPEQIEAMRTELGLDKS 60
           M  ++L R+ M +PT+  VSI VF L+R IPGDP  LMLG+ A P Q+  MR ++GLD+ 
Sbjct: 1   MFAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEGADPAQLALMRHQMGLDQP 60

Query: 61  MLQQFVIWAGNVVQGDFGRSIVNDEAVLPLVVSRFLVSAEIVVVAVLLASLIAVPAGVIA 120
           +  Q+++W  + + GD G S  N  AVLPL+  RF VSA IV+VAV LASLIAVPAG++A
Sbjct: 61  LPVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGLVA 120

Query: 121 AWKQNSLTDLALVGTATLLLSIPTFWLGLLLLLFFGLKLGWLPVLGYVSISDNLVGGMLY 180
           AW+++  TDLA++G ATL+LS+P+FWLGLLLL+FFG  LGWLPV+GYV +S+N   G+LY
Sbjct: 121 AWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVGYVPMSENFSQGVLY 180

Query: 181 LVLPVMTLVIHEMGVLIRMARASTLEVLRLDYITHARAKGLSESAVLWRHAFKNAFGPTW 240
           ++LP+ TL++ E GVL RM+RAST+E+LRL+Y+THARAKG+ ES VL RH   NAF PT 
Sbjct: 181 VILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRHVLPNAFNPTL 240

Query: 241 TMIGLILGNLLGGIAVIETVFTIPGLGRLMVDSIFARDYPVIQGCLLFVSLSYVLVNLFV 300
           TMIGLILG+LL GIAV+ETVFT+PGLGRLM+DSIFARDYPV+QGCLLF +  YV++NL V
Sbjct: 241 TMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTACIYVVINLVV 300

Query: 301 DLLYPLFDPRV 311
           DL YPLFDPRV
Sbjct: 301 DLCYPLFDPRV 311