Pairwise Alignments

Query, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Dickeya dianthicola ME23

 Score =  130 bits (328), Expect = 3e-35
 Identities = 84/293 (28%), Positives = 155/293 (52%), Gaps = 10/293 (3%)

Query: 8   AAMSVLLGTAAHAETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVEDAQNDVAKQQ 67
           A  + +   A   +T+ + ++  ++ F   L++G    + +L G  L + D+QN+ AK+ 
Sbjct: 14  ALSAAVSANALAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVILDSQNNPAKEL 72

Query: 68  SQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSLPDGQAFVAS 127
           S +Q+        +++NP D++A     KLA  AKIP++ ++R   + + +    + VAS
Sbjct: 73  SNVQDLTVRGTKLLLINPTDSNAVGNAVKLANQAKIPVITLDRVAASGEVI----SHVAS 128

Query: 128 DETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTDECKGISVVEEQ 187
           D    G +    + + LG     + + G     AAR R       +K+ E    +++  Q
Sbjct: 129 DNAFGGKVAGDFIAKKLGEGAKVIQLEGLAGTSAARER---GAGFIKSAEKNKFAMLASQ 185

Query: 188 TANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMKSYVVAGVDATQ 247
            A++ RT+G +++ N L++  +  AV A NDEMA+GA++AL+ AG+D    +V G D T 
Sbjct: 186 PADFDRTKGLNVMQNLLTAHPDVKAVFAQNDEMALGALRALQTAGRD--DVLVVGFDGTA 243

Query: 248 DALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQLVTPE 300
           D + A++ G L  TV Q     G   ++ A K++KG+K++  + +  +LVT +
Sbjct: 244 DGVKAVEGGKLAATVAQRPEQIGIIGVETADKVLKGEKVQPIIPVDLKLVTKQ 296