Pairwise Alignments

Query, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 295 a.a., ribose ABC transporter substrate-binding protein RbsB from Dickeya dadantii 3937

 Score =  132 bits (331), Expect = 1e-35
 Identities = 87/295 (29%), Positives = 158/295 (53%), Gaps = 11/295 (3%)

Query: 5   IIGAAMSVLLGTAAHA-ETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVEDAQNDV 63
           +   A+S  + T A A +T+ + ++  ++ F   L++G    + +L G  L + D+QN+ 
Sbjct: 10  VSAVALSAAVSTNALAKDTIALVVSTLNNPFFVSLKDGAQKEADKL-GYNLVILDSQNNP 68

Query: 64  AKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSLPDGQA 123
           AK+ S +Q+        +++NP D++A     KLA  AKIP++ ++R   + + +    +
Sbjct: 69  AKELSNVQDLTVRGTKLLLINPTDSNAVGNAVKLANQAKIPVITLDRVAASGEVV----S 124

Query: 124 FVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTDECKGISV 183
            VASD    G +    + + LG     + + G     AAR R       +K+ E    ++
Sbjct: 125 HVASDNAFGGKVAGDFIAKKLGEGAKVIQLEGLAGTSAARER---GAGFMKSAEKNKFAM 181

Query: 184 VEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMKSYVVAGV 243
           +  Q A++ RT+G +++ N L++  +  AV A NDEMA+GA++AL+ AG+D    +V G 
Sbjct: 182 LASQPADFDRTKGLNVMQNLLTAHPDVKAVFAQNDEMALGALRALQTAGRD--DVLVVGF 239

Query: 244 DATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQLVT 298
           D T D + A++ G L  TV Q     G   ++ A K++KG+K++  + +  +LVT
Sbjct: 240 DGTADGVKAVEGGKLAATVAQRPEQIGIIGVETADKVLKGEKVQPIIPVDLKLVT 294