Pairwise Alignments

Query, 362 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 357 a.a., Diacetylchitobiose uptake system ATP-binding protein MsiK from Xanthobacter sp. DMC5

 Score =  322 bits (824), Expect = 1e-92
 Identities = 177/363 (48%), Positives = 240/363 (66%), Gaps = 12/363 (3%)

Query: 4   SVSIRDLSLSFGAVTVLKDLNLDIYDGEFLVLLGSSGCGKSTLLNCIAGLLEPTDGQIFI 63
           +V IR +  ++G+  V+  +++DI DGEF+VL+G SGCGKSTLL  IAGL   + G+I I
Sbjct: 3   TVDIRGVKKAYGSTQVIHGVDVDIRDGEFVVLVGPSGCGKSTLLRMIAGLENISGGEILI 62

Query: 64  KDRNVTWEEPKDRGIGMVFQSYALYPQMTVEKNLSFGLQVAKIPKDEIERRVKRAAGILQ 123
            +R +    PK+R I MVFQ+YALYP MTV  N+ F L++ K PK EIE RV+RAA IL 
Sbjct: 63  GNRVINEMPPKERDIAMVFQNYALYPHMTVADNMGFSLKLRKAPKSEIESRVQRAAEILN 122

Query: 124 IEPLLKRKPAELSGGQRQRVAIGRALVRDVDVFLFDEPLSNLDAKLRSELRVEIKRLHQS 183
           +  LL R P +LSGGQRQRVA+GRA+VRD  VFLFDEPLSNLDA+LR ++R EIK LHQ 
Sbjct: 123 LTKLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAQLRVQMRTEIKELHQR 182

Query: 184 LKNTMIYVTHDQIEALTLADRIAIMKSGVIQQLADPVTIYNKPRNLFVAGFIGSPSMNFL 243
           LK T +YVTHDQIEA+T+AD+I +M  G+++Q+  P+ +Y++P N FVAGFIGSPSMNF+
Sbjct: 183 LKTTTVYVTHDQIEAMTMADKIVVMHDGIVEQIGAPLDLYDRPANQFVAGFIGSPSMNFV 242

Query: 244 RGELIEKDGKVVFTTNGVSFSLDGYQPETPLAAGRAVVLGVRPEHVRVDADILSGEVHEA 303
           +G++      ++ T +GV   L   Q    L+ G+ VV G+RPEH+R+D   +      A
Sbjct: 243 KGKVRLGANPMLVTDSGVEVPLPDAQ---GLSDGQKVVYGLRPEHIRLDPAGV-----PA 294

Query: 304 VVDIEEPMGADNLI--WLKHAGHTMSVRVGGHRR--FSPGTKVRLGLDLTMASLFDAESE 359
            V + EP G++ L+   L   G    +      R  FSPG  +R+     +  LFD  + 
Sbjct: 295 QVVVTEPTGSEILVVARLGEGGDAQEITCLFRERLSFSPGEVIRIAPQPGLTHLFDEATG 354

Query: 360 ERL 362
            RL
Sbjct: 355 SRL 357