Pairwise Alignments

Query, 324 a.a., trehalose/maltose ABC transporter permease from Agrobacterium fabrum C58

Subject, 286 a.a., Inner membrane ABC transporter permease protein YcjO from Xanthobacter sp. DMC5

 Score =  164 bits (414), Expect = 3e-45
 Identities = 99/296 (33%), Positives = 158/296 (53%), Gaps = 20/296 (6%)

Query: 27  AWLFLAPTFLVLALVAGWPLVRTVWFSFTDASLTNLDGAQFVGLKNYLTWITLSSGRTIY 86
           ++LFL      L +VA  P+V  V  SF            FVG   +       +G   Y
Sbjct: 9   SFLFLGLAVTALLIVA--PVVYAVSLSFYQMD-------SFVGAPKW-------AGLDNY 52

Query: 87  RGLLADPAWWGAVLNTLKFTILSVSFETVLGLIVALVLNAEFKGRGFVRAAILVPWAIPT 146
             +L+   +W A++N   ++  ++ F+ VLG+  ALVLN  F GR  VR   ++P+ +PT
Sbjct: 53  TRMLSQWVFWRALINGFIYSFGTIIFQVVLGIGFALVLNQVFPGRNIVRGLSILPYLLPT 112

Query: 147 IVSAQMWAWMLNDQFGILNDLFLNLGLISNKIAWTANPDTAMVAVLIVDIWKTTPFMALL 206
           +V    + WM++   G+L  +   LGL   ++ W  +P  AM +V++V +W  TPF+   
Sbjct: 113 VVVVLTFKWMVDGSIGVLTTMMSALGL--PQVQWFESPGAAMASVILVSVWMWTPFVTTT 170

Query: 207 ILAGLQMVPKDMYEAAKVDGIHPVKVFFRVTLPMIRPALMVAVIFRMLDAMRVFDLIYIL 266
            LA LQ VP  +YEAAKVDG + V+ FF +TLPM++P L V V+ R +     FD+I++L
Sbjct: 171 FLAALQTVPSSLYEAAKVDGTNAVQRFFHITLPMLKPILTVIVLLRAVWMFNKFDVIWLL 230

Query: 267 TPNN--AQTRTMSVLARENLFDFDKFAYGAAASTMLFLIIASITVIYMWLGRVNTD 320
           T       T  +++L+ +  F       GAA +T+ F I++ +  IY  L  ++T+
Sbjct: 231 TQGGPVGATEHLAILSYKQAFGQFDIGGGAAVATISFAILSLVVFIYFRLFPLDTE 286