Pairwise Alignments

Query, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

 Score =  494 bits (1271), Expect = e-144
 Identities = 268/569 (47%), Positives = 372/569 (65%), Gaps = 40/569 (7%)

Query: 13  DAVLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRE 72
           D +L VRNL+  F+   G    VR+IS+ V  GET+AI+GESGSGKSV+S +IM L+D  
Sbjct: 3   DHLLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMP 62

Query: 73  SSRVQ-GEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCH 131
             ++  GEILL G++LL +S D  R V G  +AMIFQ+P++ LNP++T+G Q+ EAL  H
Sbjct: 63  PGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALRTH 122

Query: 132 QPMSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADE 191
             +   +A+ E +RL ++V +P      D+YPH FSGG RQRVMIAMALA KP LLIADE
Sbjct: 123 G-IDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIADE 181

Query: 192 PTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATA 251
           PTTALDVT+Q ++L L+K LQ E G  VL ITHD+GVV+E+ADR VVM +G  VE G   
Sbjct: 182 PTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTVR 241

Query: 252 DIFHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDASAQPV 311
           +++   +HPYT+ L++A P                     G+  EP           +P+
Sbjct: 242 EVYRNPQHPYTKKLIAAAP-------------------GKGQLHEP-------STDGEPI 275

Query: 312 LKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRL 371
           LKV    K +           G   A++ +SFDL+AGET+++VGESG GKST  R ++RL
Sbjct: 276 LKVRNARKSY-----------GGFEALKGISFDLKAGETVAVVGESGSGKSTLARILLRL 324

Query: 372 IEPDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEH-R 430
            +PD+G+    G+++ TL  S + ++R+ +QM+FQDP  SLNPRMTV   I+E ++ H  
Sbjct: 325 DDPDSGTAHWKGQDLFTLSPSELFKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPE 384

Query: 431 MGSAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVS 490
           +    + +   A++L +VGLSP+   RYPH+FSGGQRQRI IARALAL+P++IV DE+VS
Sbjct: 385 ILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRIAIARALALEPQLIVCDEAVS 444

Query: 491 ALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVF 550
           ALDVS++AQV+ L+  L++ + +AF+FI+HD+ +V   +  V VM  GE+VE G  A VF
Sbjct: 445 ALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFGTVAQVF 504

Query: 551 DNPQHDYTRKLMAAVPVPDPDRRNTRRGA 579
           DNPQ  YT+ L++A   PDPD +   R A
Sbjct: 505 DNPQQRYTQALISATLDPDPDVQAANRNA 533