Pairwise Alignments

Query, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  495 bits (1274), Expect = e-144
 Identities = 277/576 (48%), Positives = 370/576 (64%), Gaps = 43/576 (7%)

Query: 15  VLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRESS 74
           +L VRNL T F +  G    V DISF + PG+T+ +VGESGSGKSVT+ SI++++D    
Sbjct: 7   LLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPGY 66

Query: 75  RVQGEILLGGRNLLSLS-------EDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEA 127
              G I+L   +  S+          A+R VRG ++AMIFQEPM+SL+P+ T+GDQI+E 
Sbjct: 67  ITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEV 126

Query: 128 LLCHQPMSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLL 187
           L  H  MSKA+ARAE + LL +V IP+     D Y  ++SGGMRQR MIAMALA KP+LL
Sbjct: 127 LRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLL 186

Query: 188 IADEPTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEV 247
           IADEPTTALDVT Q +ILDLI  LQ+  G +VLFITHDMGVVA+IAD  +VM+ G   E 
Sbjct: 187 IADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEY 246

Query: 248 GATADIFHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDAS 307
           G    IFH+ + PYTR L+ +V  L   K E R  R P+                  D +
Sbjct: 247 GTVEQIFHKPQDPYTRMLIGSVLKL-EQKAEIRLARPPL------------------DQT 287

Query: 308 AQPVLKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRA 367
           A P+L+V+ L+  F           G + A++ VS  L  GETL +VGESG GK+T GR+
Sbjct: 288 AAPILEVKDLSMHF-----------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRS 336

Query: 368 IMRLIEPDAGSVVVNGENILTLDKS-----GMREMRKTVQMIFQDPFASLNPRMTVGAAI 422
           IMRL +P AG ++    +   +D S      ++  R+ ++M+FQDPF SLNPRMTV   I
Sbjct: 337 IMRLYDPTAGEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVI 396

Query: 423 AEPFLEHRMGSAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKV 482
            EP L + +   +E +E V  ++ +VGL P    RYPH FSGGQRQRI IARA+ L+P++
Sbjct: 397 GEPLLVNGIAKGKELEERVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRI 456

Query: 483 IVADESVSALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVE 542
           IVADE+ SALDVS++ QV++L++ LQ  L LA++FISHD+ V+  +  RV VMY G++VE
Sbjct: 457 IVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVE 516

Query: 543 IGPRADVFDNPQHDYTRKLMAAVPVPDP-DRRNTRR 577
           +G    V + P H YT+ L++A+P PDP DR  TRR
Sbjct: 517 VGEAEKVCNAPDHPYTQALLSAIPRPDPRDRDRTRR 552