Pairwise Alignments

Query, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 546 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

 Score =  478 bits (1231), Expect = e-139
 Identities = 272/552 (49%), Positives = 364/552 (65%), Gaps = 30/552 (5%)

Query: 15  VLSVRNLTTSFHVDGGWKPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRLLDRES- 73
           +LSVR+L+ +FH  G     V  +SFD+ PGE VA+VGESGSGKSVT+ SI++LL   + 
Sbjct: 9   LLSVRDLSVAFHQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSILKLLPYPAA 68

Query: 74  SRVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEALLCHQP 133
           S   G+IL  G+++L+L E A+R VRGN++ MIFQEPMTSLNPL TI  QI E L  HQ 
Sbjct: 69  SHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQIGEILELHQA 128

Query: 134 MSKAEARAETVRLLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLLIADEPT 193
           ++ AEAR  T+ LL +V I     R   YPH  SGG RQRVMIAMALA++PKLLIADEPT
Sbjct: 129 ITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALANRPKLLIADEPT 188

Query: 194 TALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEVGATADI 253
           TALDVT+Q QIL+L+  L+ + G S+LFITHD+G+V + ADR  VM +G+ VE G    +
Sbjct: 189 TALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKGKIVETGTVEQV 248

Query: 254 FHRGKHPYTRALLSAVPVLGSMKGEERPLRFPIVNTATGETQEPVRPADTVDASAQPVLK 313
           F   +H YTR LL+A P     KGE                     P  + DAS   V++
Sbjct: 249 FTDPQHAYTRHLLAAEP-----KGE---------------------PPHS-DASKPVVMQ 281

Query: 314 VEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMRLIE 373
            + +   F I +GL+ R+   V AV+ +   LRAG+T+ +VGESG GK+T G A+ RLI 
Sbjct: 282 GDDIKVWFPIKAGLMRRVIDHVKAVDGIDITLRAGQTVGVVGESGSGKTTLGLALSRLI- 340

Query: 374 PDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEH-RMG 432
              G +   G++I +     M+ +R  +Q++FQDP+ SL+PRM+VG  IAE    H R  
Sbjct: 341 ASKGRISFIGQSIDSYSYEMMKPLRNRLQVVFQDPYGSLSPRMSVGEIIAEGLKVHERSL 400

Query: 433 SAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVSAL 492
           SA E    VA  L +VGL P    RYPHEFSGGQRQRI IARA+ L+P+ ++ DE  SAL
Sbjct: 401 SADERDTRVATALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPRFVMLDEPTSAL 460

Query: 493 DVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVFDN 552
           D+S++AQV++L+ DLQ   +LA+LFISHD+ VV+ +++ + VM  G++VE GP A++F N
Sbjct: 461 DMSVQAQVVDLLRDLQAKHELAYLFISHDLRVVKALANDLIVMRHGKVVESGPAAEIFAN 520

Query: 553 PQHDYTRKLMAA 564
           PQ DYT+ L+AA
Sbjct: 521 PQQDYTKALLAA 532



 Score =  198 bits (503), Expect = 6e-55
 Identities = 114/274 (41%), Positives = 172/274 (62%), Gaps = 15/274 (5%)

Query: 305 DASAQPVLKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTT 364
           + + QP+L V  L+  F  H G          AV++VSFDL  GE ++LVGESG GKS T
Sbjct: 3   ETNTQPLLSVRDLSVAF--HQG-----GATSVAVDHVSFDLMPGEVVALVGESGSGKSVT 55

Query: 365 GRAIMRLIEPDA-----GSVVVNGENILTLDKSGMREMR-KTVQMIFQDPFASLNPRMTV 418
             +I++L+   A     G ++ +G+++LTL +  +R +R   + MIFQ+P  SLNP  T+
Sbjct: 56  ANSILKLLPYPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTI 115

Query: 419 GAAIAEPFLEHRMGSAREAKEVVADMLNKVGL-SPDMAAR-YPHEFSGGQRQRICIARAL 476
              I E    H+  +  EA++   ++L +VG+  P+   + YPHE SGGQRQR+ IA AL
Sbjct: 116 ERQIGEILELHQAITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMAL 175

Query: 477 ALQPKVIVADESVSALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMY 536
           A +PK+++ADE  +ALDV+++AQ++ L+ DL+    ++ LFI+HD+ +V + + RV VM 
Sbjct: 176 ANRPKLLIADEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMT 235

Query: 537 LGEIVEIGPRADVFDNPQHDYTRKLMAAVPVPDP 570
            G+IVE G    VF +PQH YTR L+AA P  +P
Sbjct: 236 KGKIVETGTVEQVFTDPQHAYTRHLLAAEPKGEP 269