Pairwise Alignments

Query, 404 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  337 bits (864), Expect = 4e-97
 Identities = 185/380 (48%), Positives = 248/380 (65%), Gaps = 2/380 (0%)

Query: 8   IAAVLLTGIVLVGCSDEQASAPAAPPPGAVKVVAVKPEELPITNELPGRIAPTRLAEVRP 67
           +A + L  + L GCSD  A      P   V+V  ++ + L I++EL GRI   R AEVR 
Sbjct: 12  LALMALLSLSLAGCSDS-AEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRA 70

Query: 68  RVSGIIVERVFEQGSLVKEGDVLYRIDRAPFQVRVDSAEGTLRRAQAAQLQARQTADRQQ 127
           RV+G++++RV+ +GS VK+GDVL+ ID APF+   DSA  TL +A+A + QAR    R +
Sbjct: 71  RVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYR 130

Query: 128 QLRRSNVGSQQEFDNAIALLAQADAEVAVAEAGVAEARLNLQYADVKAPISGVIGRARIT 187
           +L      S+QE+DNA A   QADAEVA A A +  ARLNL YA V APISG IGRA++T
Sbjct: 131 ELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVT 190

Query: 188 EGALVSATGSENLATIQQLDPIYADFTQPAADLIRLRKALQDGQL-MTGQNEAEVNLLFD 246
           EGALV    +  LATIQQLDPI+AD TQ   +L  LR+AL+ G+L   G  +A   L+ D
Sbjct: 191 EGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQD 250

Query: 247 DGSRYPVSGRLLFSEAAVDETTGQVTLRGEFPNPNGDLLPGMYVRVQIQQGIQKAAFAVP 306
           DGS YP+ G+LLFS+ +VD +T Q+TLR EFPNP+ DLLPG YVRV+++Q +Q    +VP
Sbjct: 251 DGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVP 310

Query: 307 QQAVQRDAGGQASVLVVNAEDTVEQRRVSVGRSIGDRWVISEGLDDGDRVVAEGFQKTAP 366
           Q+A+ RD+ G   VLVV+    V  R+V +G + GDRW++SEGL  G+RVV EG Q    
Sbjct: 311 QRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKA 370

Query: 367 GAKVKPEPWSQEPDVAAAAG 386
           G +V+ +     P +A   G
Sbjct: 371 GDQVQVDNTPAAPPIAQHTG 390