Pairwise Alignments

Query, 1044 a.a., RND multidrug efflux transporter from Agrobacterium fabrum C58

Subject, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECRC62

 Score = 1082 bits (2798), Expect = 0.0
 Identities = 550/1032 (53%), Positives = 745/1032 (72%), Gaps = 6/1032 (0%)

Query: 1    MARFFIDRPIFAWVVAIFIMLAGLLAIPMLPIAQYPNVAPPQISIGTNYPGASPEDIYQS 60
            MA FFI RPIFAWV+AI +M+AG LAI  LP+AQYP +APP +S+  NYPGA  + +  +
Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61   VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIARVEPRLPR 120
            VT+ IE+ +NG+  L+Y  STS+S+G ++I +TF+ GT+   AQV+VQN++    P LP+
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  SVTQQGLRVEQAGTSFLMMVALTSVDGNTDAIGLGDYLSRNVLGELRRVPGVGSAQLFAT 180
             V QQG+ VE++ +S+LM+    S + +T    + DY++ NV   L R+ GVG  QLF  
Sbjct: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181  QRSMRIWMDPDKMLGLSLTSDDVINAIQAQNSQVAAGRIGASPNPVGQQISATVNVQGQL 240
            Q +MRIW+D D +    LT  DVIN ++ QN Q+AAG++G +P   GQQ++A++  Q +L
Sbjct: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240

Query: 241  TSPEEFGSIVLRANPDGSSVRLRDVARVEVGGESYNFSSRLNGKPSAAIGVQLSPTANAM 300
             +PEEFG + LR N DGS VRL+DVARVE+GGE+YN  +R+NGKP+A +G++L+  ANA+
Sbjct: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301  QTSEGVRATMEELSRYFPQGIEYEIPYDTSPFVKISIEKVIHTLIEAMILVFVVMFVFLQ 360
             T++ ++A + EL  +FPQG++   PYDT+PFV++SI +V+ TL EA++LVF+VM++FLQ
Sbjct: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361  NIRYTIIPTLVVPVALLGTCAVMYVSGFSINVLTMFAMVLAIGILVDDAIVVVENVERIM 420
            N+R T+IPT+ VPV LLGT A++   G+SIN LTMF MVLAIG+LVDDAIVVVENVER+M
Sbjct: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  AEEHLSPKEATRKAMGQISGAIIGITLVLTAVFVPMAFFPGAVGIIYQQFSLTMVVSILF 480
             E+ L PKEAT K+M QI GA++GI +VL+AVF+PMAFF G+ G IY+QFS+T+V ++  
Sbjct: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481  SGFLALSLTPALCASFLKPIKAGHHEKK-GFFGWFNRNFDKASHKYSSSVGGIIKRSGRF 539
            S  +AL LTPALCA+ LKP  A HHE K GFFGWFN  FD + + Y++SVG I+  +GR+
Sbjct: 481  SVLVALILTPALCATLLKPTSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540

Query: 540  MIIYAALLAGLGWAYMQLPSSFLPNEDQGYLIVDIQAPAEASTERTLQSIQQIEKIFM-- 597
            ++IYA ++AG+   +++LPSSFLP EDQG  +  IQ PA A+ ERT + + Q+   ++  
Sbjct: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600

Query: 598  EEPAVERVIAISGFSFSGSGQNAGLAFATLKDWSER-GPEDSAAAISARINGKLWGLPDA 656
            E+  VE V  ++GFSFSG  QNAG+AF +LK W ER G E+SA A+  R   +L  + D 
Sbjct: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660

Query: 657  MSFALSPPPIQGLGNSSGFTFRLQDRSGAGQTALSAAGAQLMAAARQSPV-LAGLRIEGM 715
                 + P I  LG ++GF F L D++G G  AL+ A  QL+  A Q P  L  +R  G+
Sbjct: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720

Query: 716  PDAAQVNLIIDREKANTFGVTFSDINATISANMGSSYVNDFPNAGRMQRVTVQAEQGQRM 775
             D AQ  L +D+EKA   GV+ SDIN TIS  +G +YVNDF + GR+++V VQA+   RM
Sbjct: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780

Query: 776  KTEDLLNLNVRNANGGMVPVSSFATVEWVRGPSQVVGYNGYPAIRVSGQSAPGYSSGDAI 835
              ED+  L VR+ANG MVP S+F T  WV G  ++  YNG P++ + G++APG SSGDA+
Sbjct: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840

Query: 836  AEMERLARELPGGFGFEWTGQSLQEIQSGSQAPALIGLSVLFVFLLLAALYESWSIPLSV 895
            A ME LA +LP G G++WTG S QE  SG+QAPAL+ +S + VFL LAALYESWSIP+SV
Sbjct: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900

Query: 896  MLVVPLGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDL-RAEGKSTY 954
            MLVVPLG++G + A  L    NDVYF+VGL+  IGLSAKNAILI+EFAKDL   EGK   
Sbjct: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960

Query: 955  DATVEAAHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAIFF 1014
            +AT+ A  +R RPILMTSLAF LGVLP+AI++GA + +QNA+G GV+GGM+SAT+LAIFF
Sbjct: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020

Query: 1015 VPVFFVFVMKFF 1026
            VPVFFV + + F
Sbjct: 1021 VPVFFVVIRRCF 1032