Pairwise Alignments

Query, 278 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 272 a.a., carbohydrate ABC transporter permease from Serratia liquefaciens MT49

 Score =  142 bits (359), Expect = 6e-39
 Identities = 84/278 (30%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 1   MRSKSRSLFWQKMALHATLTPLAIIWLFPLWMMFVFSTMPDYGIFSPDIVLVPSTNFMEN 60
           M    R+L +  M L A  + +  IW      M V S           + L+P+   ++ 
Sbjct: 1   MSISKRTLVYLFMVLAALASVVPFIW------MLVTSLKTQAESIQIPLTLLPAHPSLQA 54

Query: 61  LSNLQADTNFLRAMFISITVAVIYTVLSVFLTSMAGWALARYRFAGRRVVIAIILGTITL 120
              +  +  F      S+        L + + +MA +  +R  F GR  V  + +  + +
Sbjct: 55  YGKIMREIPFADFYLNSLLATFFTVTLQMVIATMAAYGFSRLHFRGRDAVFLVCISILMV 114

Query: 121 PFAVVVIPQFIMVAREFKLANTWIALIVPPLFNSLGVLFMRQSFSMMPTELFDAARVEGV 180
           P    +IPQF++V ++  L N+   L++P +F+      +RQ F  +P E+ +AA ++G 
Sbjct: 115 PGQAFLIPQFLVV-QKLGLVNSITGLVLPGIFSIYATFLLRQFFLAVPKEMEEAALIDGY 173

Query: 181 KEWQIFLRIALPLARPTMAALSIILFLASWNNYLWPLLINSRPGMMTAPVALGTLIGLTK 240
             + IF RI LPL RP + A  II  L SWNN +WPL++N+    +T PV L +L     
Sbjct: 174 SYFAIFWRIMLPLIRPGIIACIIINGLWSWNNLMWPLIVNTTTEKLTLPVGLASLSSRAG 233

Query: 241 VSWGGIMAGAVLLTAPILVVFVALQRHFIAGISAGAVK 278
           V +  +MAGA++   P+L++F+  QR+FI GI++  VK
Sbjct: 234 VEYPLLMAGALMAVIPMLMLFILFQRYFIQGIASAGVK 271