Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC101

 Score =  115 bits (288), Expect = 1e-30
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 11/298 (3%)

Query: 11  AALAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKEAGVKLVIFNA 70
           A L + V   AT+SA  +  A+ TIALV       FF  + +GA+K A + G  LV+ ++
Sbjct: 7   ATLVSAVALSATVSANAM--AKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64

Query: 71  NNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAILPEGPQKA 130
            N+PA + + ++    +    + +   D + +  AVK A  ANIPV+ +D    +G   +
Sbjct: 65  QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVS 124

Query: 131 QIGVDNGKAGADMGKFFLDYVKSDMGGKAK-IGVVGALNSFIQNIRQKGFEDTI-KDKTG 188
            I  DN   G   G    DY+    G  AK I + G   +     R +GF+  +   K  
Sbjct: 125 HIASDNVLGGKIAG----DYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFN 180

Query: 189 ITTAGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQSKQKDIKVF 248
           +  +   D    +   L+  +NL+T +PD+ A++A  +   LGA+ A+++  K  D+ V 
Sbjct: 181 VLASQPADFDRTK--GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGK-SDVMVV 237

Query: 249 GWDLTKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGGTVEKTIAVPVTIVTK 306
           G+D T      ++ G +A  I Q P ++GA  V+    V  G  V+    V + +V K
Sbjct: 238 GFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVK 295