Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 309 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score =  108 bits (270), Expect = 2e-28
 Identities = 82/302 (27%), Positives = 128/302 (42%), Gaps = 7/302 (2%)

Query: 16  TVLAGATLSAGLVQAAE-KTIALVQINQQALFFNQMNEGAEKAAKEAGVKLVIFNANNDP 74
           T  A   LS G   AAE K I L   N QA FFNQ+ +  E  AK  G+ +V  +A  D 
Sbjct: 9   TSAALLALSLGSANAAEVKKIGLAVANLQANFFNQIKQAVEAEAKTRGIAVVTVDAKGDG 68

Query: 75  AAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAILPEGPQKAQIGV 134
             Q + I+  + Q +D +  +          VK A AA +PV+ ID      P    +  
Sbjct: 69  PTQVNQIQDLLTQNIDALIYIPAGAAAATVPVKLAKAAGVPVINIDRNADGAPGDTFLAT 128

Query: 135 DNGKAGADMGKFFLDYVKSDMGGKAKIGVVGALNSFIQNI-RQKGFEDTIKDKTGIT-TA 192
           D+  +     K   DY+    GG  K+ ++         + R KG  +++K  +G+   A
Sbjct: 129 DSVASA----KSVCDYIIKQAGGAGKMVIIHGQKGTTPEVDRTKGCMESVKANSGVKIVA 184

Query: 193 GVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVAAVESQSKQKDIKVFGWDL 252
                   QD      +N++  NPD++ ++A  +   LGA  A++  +  + I V G+D 
Sbjct: 185 EQWSNMWSQDEGFQIMQNMLQANPDVSIVFAQADGLALGAAQAIKVANPSQKIVVGGFDG 244

Query: 253 TKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGGTVEKTIAVPVTIVTKANVEPY 312
              A+  +  G       Q   +MG  AV+    +  G  V        T+ TK NV  +
Sbjct: 245 DTAALEALKNGVFDVTATQQTQKMGRMAVEMAVKIVGGEKVPAVQLSDATLTTKENVAGF 304

Query: 313 RA 314
            A
Sbjct: 305 IA 306