Pairwise Alignments

Query, 548 a.a., peptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  465 bits (1196), Expect = e-135
 Identities = 257/565 (45%), Positives = 359/565 (63%), Gaps = 27/565 (4%)

Query: 1   MSHSTTSADVVLSVRNLTVDLPRGMERSHAVKDISFDLHAGEILCIIGESGSGKSVTAST 60
           M  +  S   VLSV+NLT            V+++SFD+   E + I+GESGSGKSVT+ +
Sbjct: 8   MEQTGGSVSPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLS 67

Query: 61  IMGLLSPVITVSSGEIQFKGMDILAAKEEKIRPLRGQAVSIIFQDPLSALNPLMTVGDQV 120
           IM LL    +   G++   G D+LA  EE++R +RG+ +S+IFQ+P+++LNP+  +G Q+
Sbjct: 68  IMRLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQI 127

Query: 121 AEVLEAHGVGTRETRNAKVLELLEEVGLPDPLLMRLQYPFRLSGGQRQRVMIAMALALDP 180
           AE L  H   +     A+V+ LLE+V +P+       YP + SGG RQRVMIAMALA  P
Sbjct: 128 AEALTVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKP 187

Query: 181 DVLIADEPTTALDVTTQAQILELIRKIQKRKNMSVMFITHDFGVVAEIADRVVVMEKGYL 240
            +LIADEPTTALDVT Q QIL+LI+++Q+ + MSV+FITHD GVVAE+ADR +VM +G +
Sbjct: 188 KLLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDV 247

Query: 241 VEQGRADQVLINPVHPYTQRLVAAVPRMRS------------VERSIDEEVPVV------ 282
           VE G  D +     HPYT+ L++AVP++ S            ++    E  PVV      
Sbjct: 248 VETGTTDDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTV 307

Query: 283 -------LEVENLEKEYR-SSGSFFRKARTVKAVNNVSFKLRKGQTLGVVGESGSGKSSL 334
                  L V++L   +   SG F RK+  V AV  VSF L +G+TL +VGESG GKS+ 
Sbjct: 308 SGGKTPILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTT 367

Query: 335 GRVLLKLLDPDGGAIRFDGRDIATMDESAFRALRPYIQMIFQDPFASLNPRHTIGKILTV 394
           GR + +L++P  G +  DG ++  +D +  R +R  +QM+FQDPFASL+PR ++G  +  
Sbjct: 368 GRSITRLIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIME 427

Query: 395 GPLAHGMALH-EARTKALGILKLVGLDEQAYDRFPHEFSGGQRQRIGIARALMFDPVVLV 453
             + H +    +AR KA  +L+ VGL      RFPHEFSGGQRQRI IAR+LM DP V+V
Sbjct: 428 PFMEHRLGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIV 487

Query: 454 ADEAVSALDVSIQAQVLELLARVQREMKVAMIFITHDLRVASQICDDVLVMHKGTVVEQG 513
           ADEAVSALDVSI+AQV  LL  +Q+ + +A +FI+HD+ V  ++   V VM+ G +VE G
Sbjct: 488 ADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIG 547

Query: 514 PPTKIFRAPTHPYTQKLVAAIPGAD 538
           P   +F  P HPYT+KL++A+P  D
Sbjct: 548 PRAAVFDNPQHPYTKKLMSAVPVPD 572



 Score =  193 bits (490), Expect = 2e-53
 Identities = 109/272 (40%), Positives = 164/272 (60%), Gaps = 14/272 (5%)

Query: 11  VLSVRNLTV--DLPRGM-----ERSHAVKDISFDLHAGEILCIIGESGSGKSVTASTIMG 63
           +LSV++LT   D+  G+        HAV+ +SFDL  GE L ++GESG GKS T  +I  
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 64  LLSPVITVSSGEIQFKGMDILAAKEEKIRPLRGQAVSIIFQDPLSALNPLMTVGDQVAEV 123
           L+ P    +SG +   G ++L      +R +R ++V ++FQDP ++L+P M+VG  + E 
Sbjct: 374 LIEP----TSGNVTLDGYEVLKLDRTTLRTMR-RSVQMVFQDPFASLDPRMSVGTAIMEP 428

Query: 124 LEAHGVGTRETRNAKVLELLEEVGLPDPLLMRLQYPFRLSGGQRQRVMIAMALALDPDVL 183
              H +G +     K  +LLE+VGL   ++ R  +P   SGGQRQR+ IA +L LDP V+
Sbjct: 429 FMEHRLGQKAQAREKAADLLEKVGLSPDMMKR--FPHEFSGGQRQRIAIARSLMLDPKVI 486

Query: 184 IADEPTTALDVTTQAQILELIRKIQKRKNMSVMFITHDFGVVAEIADRVVVMEKGYLVEQ 243
           +ADE  +ALDV+ +AQ+  L+  +Q+  N++ +FI+HD  VV  ++ RV VM  G +VE 
Sbjct: 487 VADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 546

Query: 244 GRADQVLINPVHPYTQRLVAAVPRMRSVERSI 275
           G    V  NP HPYT++L++AVP      R I
Sbjct: 547 GPRAAVFDNPQHPYTKKLMSAVPVPDPARRQI 578