Pairwise Alignments

Query, 342 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  196 bits (498), Expect = 7e-55
 Identities = 116/333 (34%), Positives = 184/333 (55%), Gaps = 4/333 (1%)

Query: 9   ILNRLGAFVLVMIALSIMIFALARVVPGDPARMALGPAATQEQVDALRGE-MGLDKPLAV 67
           I  RLG  +     ++++ FAL R++PGDP  + +G      ++ A   E +GL+KPL  
Sbjct: 5   IARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYA 64

Query: 68  QYLDYIGNALHGDLGFSLVSQRPVTTDLAQTVPATVELVLVSVIFMFAVAIPLGVITAHY 127
           QYLDY+G    GDLG SL ++  V T+     PAT+EL + +++F   + +  GVI A  
Sbjct: 65  QYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVIAALK 124

Query: 128 RDRPLDHIGRILSLTGVTIPSFLFAITLQLLAARFLSGWPIIGRLDHGLGWQGGP-TGFI 186
           R    DH    +SL G ++P F + + L +  +  L   P+ GR+D  L +   P TGF+
Sbjct: 125 RGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRID--LLYDIEPRTGFM 182

Query: 187 LIDGTLAGRFDVVLDALKHLALPAFALSMAGIGQITRITRSSMIENQRKDHVLTLQSFGV 246
           LID  LA   D   DAL HL LPA  L    +  I R+TRSSM+E  R+D++ T ++ G+
Sbjct: 183 LIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGL 242

Query: 247 PERVIIFRYLLKLSSIAPLTIMGLEFASLIGNAFVIEMVFAWGGFASYGLNAILQKDLNA 306
               ++F + L+ + I  LT++GL+  +L+  A + E +F+W G   + + AI  +D   
Sbjct: 243 SPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPV 302

Query: 307 VTAVVLVAGLFFIVANLIVDVLISIIDPRLRRK 339
           V   +L+     I+ N +VD+L    +PR+R +
Sbjct: 303 VQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335