Pairwise Alignments

Query, 421 a.a., transcription termination factor Rho from Agrobacterium fabrum C58

Subject, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  492 bits (1266), Expect = e-143
 Identities = 237/369 (64%), Positives = 310/369 (84%), Gaps = 3/369 (0%)

Query: 52  IIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGE 111
           I  EGV+E++ DG+GFLRS + NYL  PDDIY+SPSQI+ F LKTGD ++G IR PKEGE
Sbjct: 227 IENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGE 286

Query: 112 RYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPL 171
           +YFALLKV ++N    E+IR ++ F+ LTPL+P ER  +      + + S+R++DL AP+
Sbjct: 287 KYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNLTTR---ADNFSTRIVDLFAPI 343

Query: 172 GKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVV 231
           GKGQRG+IVA P+TGKTVLLQ IA++I  NHPEC+L++LLIDERPEEVTDM RSVK EVV
Sbjct: 344 GKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVV 403

Query: 232 SSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGG 291
           SSTFDE A RHV+V+ MV+EKAKR+VE G DVVILLDSITRL RAYNTVVPSSGK+L+GG
Sbjct: 404 SSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGG 463

Query: 292 VDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRK 351
           VDANAL +PKRFFGAARN+E GGSLTIIATAL++TGS+MDEVIFEEFKGTGN E+ LDRK
Sbjct: 464 VDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRK 523

Query: 352 VADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKT 411
           ++++RI+PA+D+  SGTR+EDLL+ ++++Q++++LR++++ M + +A+EFL+ ++K T+ 
Sbjct: 524 LSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRD 583

Query: 412 NSDFFESMN 420
           N++F  SMN
Sbjct: 584 NAEFLISMN 592



 Score = 31.2 bits (69), Expect = 9e-05
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 6  LQELKSKSPTDLLTFAESLEVENASTMRKQELMFAIL 42
          ++ELK +  ++L   AE L V+N  +++K +L++AIL
Sbjct: 4  IEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAIL 40