Pairwise Alignments

Query, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

Subject, 456 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  391 bits (1005), Expect = e-113
 Identities = 220/458 (48%), Positives = 289/458 (63%), Gaps = 6/458 (1%)

Query: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60
           M   L DRL  I+  + G+  +TE +V   LREVR ALLEADVAL VVR F  RV++KA+
Sbjct: 1   MASALSDRLSRIVKEMRGQARITEGNVTDMLREVRMALLEADVALPVVRDFIARVKDKAL 60

Query: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120
           G  V+ S+ PGQ +V IVH EL   +G     I+L A  P VI+M GLQG+GKTTTT K+
Sbjct: 61  GQEVVGSLTPGQALVGIVHRELAATMGDGVADINLAAQPPAVILMAGLQGAGKTTTTAKL 120

Query: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180
           AK L ++ KKKVL  S D  RPAA EQL+ +  Q G +  P    Q P DIA  A+  A+
Sbjct: 121 AKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPVDIARAAIDHAR 180

Query: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
               DV+++DTAGR  IDE LM E+ ++     P E L V D++ GQDA+N AR F + +
Sbjct: 181 KHYFDVLLVDTAGRLAIDEALMREIQELHAVLKPVETLFVVDAMQGQDAINTARAFKDAL 240

Query: 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDI 300
            +TG+VLT++DGD RGGAALS+R VTG PIK  G+ E+++ L+ F   R A R+LGMGDI
Sbjct: 241 PLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLEVFDADRHAQRVLGMGDI 300

Query: 301 VSLVEKAAENIDAEKARSMAEKMAKGK-FDLNDLADQLGQMKKMGGMGGIMGLMPGMAGM 359
           ++LVE+    +D   A+ +A K+  G+ FDLND  DQL QMK+MGG+  +M  +P     
Sbjct: 301 LALVEQVTAGVDIAAAQKLAAKVKSGEGFDLNDFLDQLRQMKQMGGLSSLMDKLPAAMAA 360

Query: 360 KDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKM 419
           K      G  +K   R+  II SMT  ER  P+I+K +RK+RIAAG+G    E+N+LLK 
Sbjct: 361 KAGEVDMGRAEKDIKRKEGIICSMTLKERRKPEIIKATRKRRIAAGAGVHVQEVNRLLKE 420

Query: 420 HRGMADMMKAMGGKGKGGIMKQM--MGGLAGKMGLGGM 455
              M DMMK M G   GG+MK M  +GG+ G   L GM
Sbjct: 421 FEQMQDMMKKMKG---GGMMKMMKRLGGMKGMPKLPGM 455