Pairwise Alignments

Query, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

Subject, 453 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  436 bits (1122), Expect = e-127
 Identities = 238/462 (51%), Positives = 307/462 (66%), Gaps = 12/462 (2%)

Query: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60
           MF+NL DRL   L  ++GRG LTE +V   LREVR ALLEADVAL VVR F +RV+EKAV
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120
           G  V KS+ PGQ  VKIV  ELV  +G E  +++L A  P V++M GLQG+GKTT+ GK+
Sbjct: 61  GHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180
            K L ++ KKKVL+ S D  RPAA +QL  L  Q GVD  P   GQ P DI   A++ AK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
           L  +DV+++DTAGR H+DE +M E+  +     P E L V D++TGQDA N A+ F+E +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDI 300
            +TG+VLT++DGD RGGAALS+R +TGKPIK +G+GE+ + L+ FHP RIA RILGMGD+
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300

Query: 301 VSLVEKAAENIDAEKARSMAEKMAKGK-FDLNDLADQLGQMKKMGGMGGIMGLMPGMAGM 359
           +SL+E     +D  +A  +A K+ KG  FDLND  +QL QMK MGGM  +MG +PGM  +
Sbjct: 301 LSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQI 360

Query: 360 KDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKM 419
            D + S  M+DK+  R  AII+SMT  ERA P+I+K SRK+RIA G G    ++N+LLK 
Sbjct: 361 PDNVKSQ-MDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIAQGCGMQVQDVNRLLKQ 419

Query: 420 HRGMADMMKAMGGKGKGGIMKQMMGGLAGKMGLGGMMGGGMP 461
              M  MMK M    KGG+ K M         + GMM  G P
Sbjct: 420 FDDMQRMMKKM---KKGGMAKMM-------RSMKGMMPPGFP 451