Pairwise Alignments

Query, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

Subject, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) from Escherichia coli BL21

 Score =  441 bits (1134), Expect = e-128
 Identities = 240/462 (51%), Positives = 309/462 (66%), Gaps = 12/462 (2%)

Query: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60
           MF+NL DRL   L  ++GRG LTE +V   LREVR ALLEADVAL VVR F +RV+EKAV
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120
           G  V KS+ PGQ  VKIV +ELV  +G E  +++L A  P V++M GLQG+GKTT+ GK+
Sbjct: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180
            K L ++ KKKVL+ S D  RPAA +QL  L  Q GVD  P   GQ P DI   A++ AK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240
           L  +DV+++DTAGR H+DE +M E+  +    NP E L V D++TGQDA N A+ F+E +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDI 300
            +TG+VLT++DGD RGGAALS+R +TGKPIK +G+GE+   L+ FHP RIA RILGMGD+
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300

Query: 301 VSLVEKAAENIDAEKARSMAEKMAKGK-FDLNDLADQLGQMKKMGGMGGIMGLMPGMAGM 359
           +SL+E     +D  +A  +A K+ KG  FDLND  +QL QMK MGGM  +MG +PGM  +
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360

Query: 360 KDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKM 419
            D + S  M+DK+  R  AII+SMT  ERA P+I+K SRK+RIAAG G    ++N+LLK 
Sbjct: 361 PDNVKSQ-MDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQ 419

Query: 420 HRGMADMMKAMGGKGKGGIMKQMMGGLAGKMGLGGMMGGGMP 461
              M  MMK M    KGG+ K M         + GMM  G P
Sbjct: 420 FDDMQRMMKKM---KKGGMAKMM-------RSMKGMMPPGFP 451