Pairwise Alignments

Query, 293 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 67.4 bits (163), Expect = 4e-16
 Identities = 80/284 (28%), Positives = 123/284 (43%), Gaps = 20/284 (7%)

Query: 1   MSQIAFWGAVELGLVFAFVAIGVYLAFRVLDFPDLTVDGSFPLGAAVAAVLIIAGLNAWV 60
           ++Q+ F G + LG+++A +A G  L F   D  +     +  LGA V   L+  GLN W+
Sbjct: 4   LTQLIFSG-IALGMIYAVIAFGYQLTFATSDTLNFGQGNALMLGAMVGLTLVNMGLNYWL 62

Query: 61  ATAIAMVAGAAAGMVTATLNVR--FKILNLLASILTMIAL----FSVNLRVMGKPNVALL 114
              +  + GA  G V   + VR   KI +    I++ IAL     +V   V G+ ++   
Sbjct: 63  MIPLVCLFGAFQGAVVERIAVRPAIKIKSEFGWIMSTIALGIIFTNVAENVWGRDDLKFP 122

Query: 115 NQDTMVSPFYGLGLSEYLVRPLFV--GVLVLIAVILVWRFLESDAGLAMRATGANARMAR 172
           +     SP + LG +   +  L V   +L+++AV L  R   S  G A+ AT  +   A+
Sbjct: 123 SP-LPESPLHFLGANVLPMEILVVIGALLMMLAVELFNR--RSIYGKAVVATFNDRDAAK 179

Query: 173 AQGVKTGNQIYLGMALSNALVALGGALFAQTNGFADVTSGVGTIVVGLAAVIIGETLFG- 231
             G+ TG  I    ALS+   A  G L A        + G    +   A  IIG    G 
Sbjct: 180 LMGINTGLVITFSYALSSMTAAFAGVLIAPLT-LTGASMGAVLGLKAFAVAIIGGLTSGM 238

Query: 232 ---ARGILIALIGCVFG---SIAYRLAIQLALSSDVLGLKASDL 269
                GI++ +     G   S  Y+    L L   VL ++ S L
Sbjct: 239 GIVVGGIILGIAETTTGFYLSTGYKDVPGLVLLLIVLAVRPSGL 282