Pairwise Alignments

Query, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 296 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  172 bits (435), Expect = 1e-47
 Identities = 98/238 (41%), Positives = 144/238 (60%), Gaps = 11/238 (4%)

Query: 152 RTHFVCPAEGGEMFLLGTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIGGLAGY 211
           R  F  P  G  +F  GTD LGRD+ +R+    RISL +G   + +S ++G VIG +AGY
Sbjct: 63  RARFAPPLTGYHIF--GTDPLGRDIAARLFNAGRISLLVGFFAMVLSTLIGTVIGVVAGY 120

Query: 212 RGGTFDLIVQRIIEVLQSIPSIPLWLALAAIMPVTWSPILVYLGITIILGMLDWTGLARA 271
            GG    I+ R ++   S PSI L LALAA   V  SP +    IT+I+ +  W  +AR 
Sbjct: 121 YGGRIGAILMRFVDAFLSFPSIFLLLALAAF--VKPSPFM----ITLIIAVTSWMEIARL 174

Query: 272 VRSKLLALREEDYVLSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSF 331
           V +++ +LRE D+V++A+++G     I+ R L+P  +  +I +ATLT+   IL E  +SF
Sbjct: 175 VEAEVRSLRERDFVMAARMLGLPNGWIMFRELLPNAIGPIIVAATLTVARAILLEAYISF 234

Query: 332 LGLGLRPPITSWGILLTEARSVSVIALYPWL-LIPTIPVVLVILAFNFFGDGLRDAAD 388
           LG G++PP+ SWG +L  A+    +   PWL +IP + + L + +FNF GDGLRDA D
Sbjct: 235 LGYGIQPPLPSWGNMLNGAQ--QYLDKAPWLAIIPGVAITLAVTSFNFIGDGLRDALD 290



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 46  WWQ------FRQHKIAVWSGAFLALIYLSILISEFLAPYNLHTRNIEHIYAPP-QAIHLF 98
           WWQ      F +HK+AV     + ++  + ++  +L PY+    ++   +APP    H+F
Sbjct: 17  WWQNRTLRRFARHKLAVLGVIMIMIMIFACVVGPYLLPYDELFIDLRARFAPPLTGYHIF 76

Query: 99  DDGKFVGPFVYGREMTLDMDNLRRV 123
                 G    GR++   + N  R+
Sbjct: 77  ------GTDPLGRDIAARLFNAGRI 95