Pairwise Alignments

Query, 633 a.a., ABC transporter, substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 649 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  213 bits (543), Expect = 2e-59
 Identities = 185/621 (29%), Positives = 283/621 (45%), Gaps = 70/621 (11%)

Query: 2   ITRRTTLA------LLASVFLPAYARAAYVDP---AYFKDKREKGELPDVAERLPKNPRV 52
           +TRRT +A       L+ V   A A A    P   A  KD    G+LP +A+RLPKNP V
Sbjct: 11  VTRRTFIAGLGGVAALSLVGTSAQAAAGKEAPELAALVKD----GKLPPLADRLPKNPMV 66

Query: 53  IDMKALGREPGKHGGSVRMLIGGQRDIR--LMPISNYARLVGYDEKF-ELHPDILESYEV 109
           +       + G +GG++R  + G  D    L  + N + LV ++  F E+ P++ E +EV
Sbjct: 67  VTPF---EKVGTYGGTLRRGLRGSSDHNGILRMVGNQS-LVRWNMDFTEVLPNLAEKWEV 122

Query: 110 QEERI-FTFKLREGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLVNNNPPLIE 168
             +   FTF L EG KWSDG  FT++D  +  ED   NKE++    P +L V      + 
Sbjct: 123 SPDASEFTFHLIEGAKWSDGHPFTADDVVFAIEDCIKNKELYSA-TPAQLSVAGKAVDVS 181

Query: 169 VVDRLTVRYTWEGPNPDFLAKLAAASPARLFL-PAAYMKQFHVKYQTAENLAKLIKKNKA 227
            VD  TV++ +  PN  +L  LA        L P  Y  +F  KY  A  L   +K    
Sbjct: 182 KVDDFTVKFKFAAPNALYLENLATPLGQHPTLFPKHYCSKFLPKYNAA--LDAEVKAAGV 239

Query: 228 DDWSGLHIKMSRQV----RPENPALPTLDAW--RNTTSPPAEQFVFERNPYYHRVDENGL 281
             W+ L       +    R  N   PTLD W  +   S  A + V  RNPY+ +VD +G 
Sbjct: 240 SSWTELFRAKCGDIEIPSRWSNVDKPTLDPWVVKEPYSGGATRVVMTRNPYFWQVDTDGN 299

Query: 282 QLPYLDRFLLNVTSS-DIISAKTASGDSDLQYFGLD-FADYTFLKDAEKRFPLKVNLYKR 339
           QLPY++     ++   + +     SG  D+Q   +   A+   L    ++   ++     
Sbjct: 300 QLPYINEINFGISQDVESLMLNVISGKIDIQERHISVLANKPTLSQNMEKGNYRLMTLVP 359

Query: 340 SQGSRIALLPNLNCADPVWRTAFQDVRVRRALSLAINRHEINMVCFYGLAKESADTVLPE 399
           S   +  +  N+   DP  R  F D   R+ALSL +NR EI  + ++G ++       P 
Sbjct: 360 SAAQQCQIYLNITHKDPAMRKMFADKSFRQALSLGLNRQEIIEIVYFGQSEAYQTGPRPT 419

Query: 400 SPLYRQEFADAWSAFDRAAANRLLDEAGFDKRDNAGLRLLPDGRPAYIIVETTGESTLE- 458
            P Y ++ A   + FD   AN LLD+AG+DK++  G+RL PDG+P +  ++       + 
Sbjct: 420 HPWYHEKLARQSTEFDADKANELLDKAGYDKKNGNGIRLRPDGQPIFFSIDVIPTLYPDL 479

Query: 459 TDVMELVTDHWRHIGIAVSVRPTQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPSGLA 518
            D +ELV   W  IG+ + V   +R ++  R        +VW G           P GL 
Sbjct: 480 VDTLELVKAQWAQIGVDIKVNTIERALYYTRGDDNAHDAAVWPG-----------PGGLD 528

Query: 519 PTGDDQ-------------LQWPVWGIHYLSGGREGKEPDLPEAAHLLNLLKKWRRSVTE 565
           P  D +             + W +W   Y S G++G+EP  PE+       +K R  + +
Sbjct: 529 PMLDPRDFFAFHPQGSRYAIPWALW---YTSNGQKGEEP--PES-------QKKRFKLFD 576

Query: 566 EEREAIWLEMLGIYTQQVFSI 586
           E R    +   G + +Q+F I
Sbjct: 577 EARSTADIAKRGEFMKQIFDI 597