Pairwise Alignments

Query, 630 a.a., ABC transporter, nucleotide binding/ATPase protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  385 bits (989), Expect = e-111
 Identities = 234/569 (41%), Positives = 330/569 (57%), Gaps = 46/569 (8%)

Query: 1   MSAGADLLRIENLRVSFSLMGGTIDAVRDTSLRILPGKVTALVGESGSGKSVIGQTIMGI 60
           MSA   LL +E+L++     G    AV D S  I PG++ ALVGESGSGK++  +  +G+
Sbjct: 1   MSANPVLLNVEHLKIRVGEHGPL--AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGL 58

Query: 61  HPKTARV-NGRVLFTDPENAAAGPIDLLQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLH 119
            P   +V  GR+ F   + A+               +R+IRG  IG++FQEPM S +P  
Sbjct: 59  LPLPMQVCGGRLDFQGRDLASVST----------EALRAIRGASIGMVFQEPMVSLNPAL 108

Query: 120 TIGNQIDEALRIHSILSPAERAEKMYETLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAM 179
            IG Q+ EAL++H+ L P +  E+    L  +G    ++ +  YP + SGGMRQR M+A 
Sbjct: 109 KIGQQMSEALKLHTDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLAS 168

Query: 180 ALICRPALLIADEPTTALDVTIQAQILKLLRDLQSRLNMSMLLITHDLGVVANIADEVAV 239
            ++ RPALLIADEPTTALD   Q  +++L+ +L      ++L I+HDL +VA  A +V V
Sbjct: 169 VMLLRPALLIADEPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVV 228

Query: 240 IYQGEIMEAGTVDDIFKAPGHPYLKGLMAAVPHFDMKPGERLKALREIKVDHESLVGKKT 299
           +  G+ +E G+++DI  AP   Y + L+ A+P        R   L  + V +E LV    
Sbjct: 229 MRHGKAVEQGSIEDILLAPKAEYTRQLLEALP--------RRGVLAPLPVSNEPLVEVDQ 280

Query: 300 AAVNKTPGPLLTVDNISKTFTTRKSSWFRKSDANATKAVNSVSFEICRGECLGLVGESGS 359
             +   PGP         TF      W ++     T+ V+S S  I  GE L LVG SGS
Sbjct: 281 VCIEH-PGPT--------TF------WGKRQH---TRVVHSASLVIAPGETLALVGGSGS 322

Query: 360 GKTTVSKILMRAVRPDEGSITFHRPEGDIDVLNAKDGDLKELRSKIQMVFQDPISSLSPR 419
           GKTT+ + L+  ++P  GSI F      +D+L A +   +  R + QM+FQDP SSL+PR
Sbjct: 323 GKTTLGRSLVGLIKPCAGSIRFK----GVDILKAAN---RTHRLQCQMIFQDPYSSLNPR 375

Query: 420 MTVGNILSEPLEIHGRGDAKYRAEKVRGLVRAIGLGESALNRYPHSFSGGQRQRIGIARA 479
           M +G IL+EPL      +A  R E+V   ++ IGLGE  + R+PH  SGGQRQR+ I RA
Sbjct: 376 MKIGEILAEPLRHEPGLNAAERRERVTQTLKDIGLGEQFVERFPHQLSGGQRQRVAIGRA 435

Query: 480 LALGPELLICDEPVSALDVSVQAQILNLLKDLQQDLGLTYLFISHNLAVVDYMADRVAVM 539
           L   P+L+I DEP+SALD+++Q QIL L + LQ   G   LFISH+LA V+ +A RVAVM
Sbjct: 436 LVRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVM 495

Query: 540 CEGRIVELAPREILMRSPIHPYTKSLLAA 568
            +G +VE+  RE +   P HPYT+ LLAA
Sbjct: 496 HQGNVVEVGAREQIFDHPQHPYTRQLLAA 524



 Score =  160 bits (405), Expect = 1e-43
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 19/251 (7%)

Query: 27  VRDTSLRILPGKVTALVGESGSGKSVIGQTIMGIHPKTARVNGRVLFTDPENAAAGPIDL 86
           V   SL I PG+  ALVG SGSGK+ +G++++G+    A   G + F          +D+
Sbjct: 301 VHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCA---GSIRFKG--------VDI 349

Query: 87  LQLPKDGREIRSIRGNRIGLIFQEPMTSFSPLHTIGNQIDEALRIHSILSPAERAEKMYE 146
           L+       ++        +IFQ+P +S +P   IG  + E LR    L+ AER E++ +
Sbjct: 350 LKAANRTHRLQC------QMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQ 403

Query: 147 TLDLVGFSKPKKVVNMYPFELSGGMRQRAMIAMALICRPALLIADEPTTALDVTIQAQIL 206
           TL  +G  +  + V  +P +LSGG RQR  I  AL+  P L+IADEP +ALD+TIQ QIL
Sbjct: 404 TLKDIGLGE--QFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQIL 461

Query: 207 KLLRDLQSRLNMSMLLITHDLGVVANIADEVAVIYQGEIMEAGTVDDIFKAPGHPYLKGL 266
           +L   LQ++   + L I+HDL  V  IA  VAV++QG ++E G  + IF  P HPY + L
Sbjct: 462 ELFERLQAQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQL 521

Query: 267 MAAVPHFDMKP 277
           +AA    +  P
Sbjct: 522 LAAASPLEQLP 532



 Score =  150 bits (380), Expect = 1e-40
 Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 11/249 (4%)

Query: 337 AVNSVSFEICRGECLGLVGESGSGKTTVSK----ILMRAVRPDEGSITFHRPEGDIDVLN 392
           AV+ +SF I  GE + LVGESGSGKT  ++    +L   ++   G + F       D+ +
Sbjct: 24  AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQVCGGRLDFQGR----DLAS 79

Query: 393 AKDGDLKELR-SKIQMVFQDPISSLSPRMTVGNILSEPLEIHGRGDAKYRAEKVRGLVRA 451
                L+ +R + I MVFQ+P+ SL+P + +G  +SE L++H   D     E+   ++R 
Sbjct: 80  VSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTDLDPPQIRERCLTMLRR 139

Query: 452 IGL--GESALNRYPHSFSGGQRQRIGIARALALGPELLICDEPVSALDVSVQAQILNLLK 509
           IG+   E  L  YPH FSGG RQRI +A  + L P LLI DEP +ALD   Q  ++ L+ 
Sbjct: 140 IGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTTALDCLAQLDVIELML 199

Query: 510 DLQQDLGLTYLFISHNLAVVDYMADRVAVMCEGRIVELAPREILMRSPIHPYTKSLLAAV 569
           +L ++ G   LFISH+L++V   A +V VM  G+ VE    E ++ +P   YT+ LL A+
Sbjct: 200 ELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDILLAPKAEYTRQLLEAL 259

Query: 570 PFPDLDRPL 578
           P   +  PL
Sbjct: 260 PRRGVLAPL 268