Pairwise Alignments

Query, 1064 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  814 bits (2103), Expect = 0.0
 Identities = 440/1066 (41%), Positives = 668/1066 (62%), Gaps = 28/1066 (2%)

Query: 3    ISRFFVDRPVFAGVLSILIVVAGLLGMRALPISEYPEVVPPSVVVRATYPGANPTVIAET 62
            +S+FF+DRP+FA V++++I++ G L +  LPI++YP + PP++ +  TYPGA+   + +T
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 63   VATPLEEQINGVEDMLYMGSQATSDGVLTLTVTFKLGTDPDKAQQLVQNRVSQAEPRLPA 122
            V   +E+Q+NG++++ Y+ S++ SDG +T+T TF+ GT+PD AQ  VQN+++ A P LP 
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 123  EVRALGITTVKSSPDFIMVVNLVSKTDAYDITYLRNYATLNVKDRLARIEGVGQVQVFGA 182
            EV+  GI   K+  +F++V+ LVS+  +     L NY   N++D ++R  GVG  QVFGA
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 183  GDYSMRVWLDPQKVAEHDLAAADVSDAIRQQNVQAAAGVIGASPSPNGVDLQLNVNAQGR 242
              Y+MR+WLDP K+ +  L   DV  A+  QNVQ ++G +G  P+  G  L   +  + R
Sbjct: 181  -QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTR 239

Query: 243  LTTPEEFGNIIVKSGANGEITRLRDVARIELGAADYTLRSLLDGEPAVAVAVLQAPGSNA 302
            L T E+F +I++K   +G   RL DVA++ LG  +Y + +  +G+PA  +AV  A G+NA
Sbjct: 240  LQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299

Query: 303  IEIADNVRATMDNLQLAMPDGVKYEIVYDTTKFVRSSIEKVVDTLLEAVGLVVLVVILFL 362
            ++ A  +R T+  L+   P GVK    YDTT  V  SI  V+ TL+EAV LV LV+ LFL
Sbjct: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359

Query: 363  QTWRASIIPLIAVPVSIIGTFAVMYAFGFSINALTLFGLVLAIGIVVDDAIVVVENVERN 422
            Q +RA+II  + VPV ++GTF ++ A GFSIN LT+F +VLAIG++VDDAIVVVENVER 
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 423  I-ENGLSPRDATYKAMREVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTV 481
            + E GL P++AT ++M ++ G ++ IALVL AV +P+AF  G +G  YRQF++TI  +  
Sbjct: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479

Query: 482  ISAINSLTLSPALAALLLK-----EHGAPKDWLTRFMDKILGWFFRGFNRAFGAASNGYG 536
            +S + +L  +PAL A +LK     EH   K           G FF  FNR F  + NGY 
Sbjct: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAK-----------GGFFGWFNRNFDRSVNGYE 528

Query: 537  KTVGGLVTRKSLVMIVYMALVAATYGMFTTVPSGFVPAQDKQYLIGFAQLPDGATLDRTE 596
            ++VG ++  K   ++ Y  +V     +F  +P+ F+P +D+  L    Q P G++ +RT+
Sbjct: 529  RSVGAILRNKVPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQ 588

Query: 597  SVIKRMSAIAMETPGVSHAIAFPGLSINGFTI---GSNSGIVFAVLDDFEKRKTPELSGG 653
             V+ +M    ++    + +  F   ++NGF     G +SG+ F +L  +++R + E S  
Sbjct: 589  VVVDQMREYLLKDEADTVSSVF---TVNGFNFAGRGQSSGMAFIMLKPWDER-SKENSVF 644

Query: 654  AIAMQLNQKFAGIQDAFIAMFPPPPVNGLGQTGGFKLQIEDRAGYGYQTLDEAAKAVIAK 713
            A+A +  Q F   +DA +  F PP V  LG   GF + ++DR G G++ L EA    +AK
Sbjct: 645  ALAQRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAK 704

Query: 714  AYQTPELAGIFSSFQINVPQLFADLDRAKAEQLGVSVSDVFQTLQIYLGSLYVNDFNAFG 773
            A Q+  L+ +  +   + PQ    +D  +A  LGV+++D+  TL I LG+ YVNDF   G
Sbjct: 705  AAQSKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRG 764

Query: 774  RTYSVRVQADSQFRAHAEDIGRLKVRSATGQMIPLSTLLKVDATTGPERTNRYNGFLAAD 833
            R   V +Q +   R   ED+ +  VR+  G+M+P S+  K + T G  + +RYNG  A +
Sbjct: 765  RVKKVYIQGEPSARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAME 824

Query: 834  INGGPAPGFSSGQAQAAMEKILAENLPAGIDYEWTDLTYQQILAGNSSIVVFPLALLLVY 893
            I G PAPG+S+G+A A +E+I  E LP+GI + WT ++Y++ L+G+    +F L++L V+
Sbjct: 825  ILGAPAPGYSTGEAMAEVERIAGE-LPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVF 883

Query: 894  LVLAAQYESLTLPIAIILIVPLGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILI 953
            L LAA YES ++PIA++L+VPLG++ AL    L G  N+++  +GL+  +GL+AKNAILI
Sbjct: 884  LCLAALYESWSIPIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILI 943

Query: 954  VEFARELEFEGRTPLQAAVEASRLRLRPILMTSLAFIMGVVPLVVSTGAGAEMRAAMGVA 1013
            VEFA+EL  +GR+   AA+EA R+RLRPI+MTSLAFI+GVVPL +++GAGA  + A+G  
Sbjct: 944  VEFAKELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTG 1003

Query: 1014 VFSGMIGVTFFGIFMTPVFYVLVRKLAGNRPLIQHKQEEPANSDYK 1059
            V  GMI  T   IF  P+F+V V  L G++     K   P N  Y+
Sbjct: 1004 VIGGMISATVLAIFWVPLFFVAVSSLFGSKE--PEKDVTPENPRYE 1047