Pairwise Alignments

Query, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  133 bits (335), Expect = 5e-36
 Identities = 83/275 (30%), Positives = 145/275 (52%), Gaps = 13/275 (4%)

Query: 19  YLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEV 78
           YL+EI   P+L P+EE     R ++ GD     +++ S+LRLV KIA  Y   GL + ++
Sbjct: 66  YLNEIGFSPLLTPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDL 124

Query: 79  VSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFN 138
           + EGN+GL++AV+KFDPERGFR +TYA WWI+ +I+  I+     +++      K L   
Sbjct: 125 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHV-VKELNVY 183

Query: 139 LRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESG 198
           LR  +   Q +D  +  PE +  +  K     + ++ +N R+      +  +        
Sbjct: 184 LRAARELTQKLDH-EPSPEEIANLLEKPVGEVKRMLGLNERVS-----SVDVSLGPDSDK 237

Query: 199 QWQDWLVDDHESQEAVLIEQDELETRRRMLAKAMGVLNERERRIFEAR--RLAEDPVTLE 256
              D L DD  +    L++ D+L    + + + +  L +++R +   R      +  TLE
Sbjct: 238 TLLDTLTDDRPTDPCELLQDDDLS---QSIDQWLSELTDKQREVVIRRFGLRGHESSTLE 294

Query: 257 ELSSEFDISRERVRQIEVRAFEKVQEAVQKEALEA 291
           ++  E  ++RERVRQI+V   ++++E ++K  L +
Sbjct: 295 DVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSS 329