Pairwise Alignments

Query, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

Subject, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

 Score =  187 bits (474), Expect = 3e-52
 Identities = 107/273 (39%), Positives = 159/273 (58%), Gaps = 7/273 (2%)

Query: 14  AGLNRYLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRLVAKIAMGYRGYGL 73
           A L  Y+  +   P+L  ++E  LG+R     D +AA ++V +HLR V  IA  Y GYGL
Sbjct: 15  ANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGL 74

Query: 74  PIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQK 133
              +++ EGNVGLM+AVK+F+PE G RL ++A+ WIKA I E+ILR+W +VK+ TT  Q+
Sbjct: 75  AQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQR 134

Query: 134 RLFFNLRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRLHG-DASLNAPIKA 192
           +LFFNLR  K R+  +++     + V  +A  L V   EV  M  RL G D + +   +A
Sbjct: 135 KLFFNLRSQKKRLAWLNN-----DEVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEA 189

Query: 193 SEGESGQWQDWLVDDHESQEAVLIEQ-DELETRRRMLAKAMGVLNERERRIFEARRLAED 251
            +  + Q     ++DH    AV +E  D  +     L +A+  L+ER R I   R LAE+
Sbjct: 190 DDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRWLAEE 249

Query: 252 PVTLEELSSEFDISRERVRQIEVRAFEKVQEAV 284
             TL EL+ ++ +S ER+RQ+E  A  KV+  +
Sbjct: 250 KATLHELADKYSVSAERIRQLEKNAMNKVKALI 282