Pairwise Alignments

Query, 300 a.a., RNA polymerase sigma-32 factor from Agrobacterium fabrum C58

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  137 bits (345), Expect = 3e-37
 Identities = 84/275 (30%), Positives = 146/275 (53%), Gaps = 13/275 (4%)

Query: 19  YLDEIRKFPMLEPQEEYMLGKRYAEHGDRDAAHKLVTSHLRLVAKIAMGYRGYGLPIGEV 78
           YL+EI   P+L P+EE     R ++ GD     +++ S+LRLV KIA  Y   GL + ++
Sbjct: 67  YLNEIGFSPLLSPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDL 125

Query: 79  VSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFN 138
           + EGN+GL++AV+KFDPERGFR +TYA WWI+ +I+  I+     +++      K L   
Sbjct: 126 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHV-VKELNVY 184

Query: 139 LRRLKGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESG 198
           LR  +   Q +D  +  PE +  +  K     + ++ +N R+      +  +        
Sbjct: 185 LRAARELTQKLDH-EPSPEEIATLLEKPVAEVKRMLGLNERVS-----SVDVSLGPDSDK 238

Query: 199 QWQDWLVDDHESQEAVLIEQDELETRRRMLAKAMGVLNERERRIFEAR--RLAEDPVTLE 256
              D L DD  +    L++ D+L    + + + +G L +++R +   R      +  TLE
Sbjct: 239 TLLDTLTDDRPTDPCELLQDDDLS---QSIDQWLGELTDKQREVVVRRFGLRGHESSTLE 295

Query: 257 ELSSEFDISRERVRQIEVRAFEKVQEAVQKEALEA 291
           ++  E  ++RERVRQI+V   ++++E ++K  L +
Sbjct: 296 DVGLEIGLTRERVRQIQVEGLKRLREILEKNGLSS 330