Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  217 bits (552), Expect = 4e-61
 Identities = 136/312 (43%), Positives = 184/312 (58%), Gaps = 22/312 (7%)

Query: 30  VGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIP 89
           + E+  D SRSR+K  I    VL+NGQ   +PK+KV  G+RV I     E+   + +DIP
Sbjct: 24  LAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDAEIDEEIRFEAQDIP 83

Query: 90  LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLD 149
           LD+ YED+D++V+ KP  LVVHPGAGN  GT++NAL+++       I  V R GIVHRLD
Sbjct: 84  LDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIADVPRAGIVHRLD 139

Query: 150 KETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGR-GT 208
           K+T+G+MVVAK   A   L        +   + R Y+AV  G   T  GTV+  + R  T
Sbjct: 140 KDTTGLMVVAKTVPAQTRLVESL----QLREITREYEAVAIGH-MTAGGTVNEPISRHPT 194

Query: 209 DRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHI 268
            RT  +V        + A+THY +ME F        + + +  RLETGRTHQIRVHMAHI
Sbjct: 195 KRTHMSVHPM----GKPAVTHYRIMEHFR-------VHTRLRLRLETGRTHQIRVHMAHI 243

Query: 269 GHPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMP 328
            HPL+GD  YG   R      +E   ST+ +F RQALHA +L   HP +G  ME+   +P
Sbjct: 244 THPLVGDQVYGGRPRPPKGASEE-FISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIP 302

Query: 329 EDMEELVTALRS 340
           +DM +L+ A+R+
Sbjct: 303 QDMVDLIDAMRA 314