Pairwise Alignments

Query, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

Subject, 326 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Escherichia coli BL21

 Score =  221 bits (563), Expect = 2e-62
 Identities = 138/312 (44%), Positives = 183/312 (58%), Gaps = 22/312 (7%)

Query: 30  VGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIP 89
           + E+  D SRSR+K  I    VL+NG+   +PK+KV  G++V I     E+   + +DIP
Sbjct: 24  LAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIP 83

Query: 90  LDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLD 149
           LD+ YEDED+I++ KP  LVVHPGAGN  GT++NAL+++       I  V R GIVHRLD
Sbjct: 84  LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIADVPRAGIVHRLD 139

Query: 150 KETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGR-GT 208
           K+T+G+MVVAK   A   L        +   + R Y+AV  G   T  GTVD  + R  T
Sbjct: 140 KDTTGLMVVAKTVPAQTRLVESL----QRREITREYEAVAIGH-MTAGGTVDEPISRHPT 194

Query: 209 DRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHI 268
            RT  AV        + A+THY +ME F        + + +  RLETGRTHQIRVHMAHI
Sbjct: 195 KRTHMAVHPM----GKPAVTHYRIMEHFR-------VHTRLRLRLETGRTHQIRVHMAHI 243

Query: 269 GHPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMP 328
            HPL+GDP YG   R       E   ST+ +F RQALHA +L   HP +G  ME+   +P
Sbjct: 244 THPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302

Query: 329 EDMEELVTALRS 340
           +DM EL+  +R+
Sbjct: 303 QDMVELIEVMRA 314