Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  306 bits (785), Expect = 3e-88
 Identities = 153/301 (50%), Positives = 218/301 (72%), Gaps = 5/301 (1%)

Query: 4   FIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFAG 63
           F+QQL+NGLTLGS+YGLIAIGYTMVYGIIGMINFAHG+++M+  + A I  L   ++F  
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAIS-LALLAYFGI 63

Query: 64  IPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQVTQ 123
               LL+L  +I  +++TG++ WVIERVAY+PLR S RLAPLI+AIG+S+ L N+ Q+ Q
Sbjct: 64  ESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQ 123

Query: 124 GPRNKPIPSMVTESYHF----GAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRAT 179
           G + + IP+++  ++      G + ++  ++ I+V     +    Y++  T LGR  RAT
Sbjct: 124 GAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCRAT 183

Query: 180 EQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAAV 239
           +QDRKMA++LG++ D+ IS  F++GAA+AA+AG +  + YG   F  GF+ G+KAFTAAV
Sbjct: 184 QQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTAAV 243

Query: 240 LGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPEVEK 299
           LGGIGSLPGA+LGG+++G+ ESL+S   +  YKDV +F +L  +LIF+P G+LGRP V K
Sbjct: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLLGRPLVAK 303

Query: 300 V 300
           V
Sbjct: 304 V 304