Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 307 a.a., Branched-chain amino acid ABC transporter, permease protein LivH from Pseudomonas sp. S08-1

 Score =  295 bits (755), Expect = 9e-85
 Identities = 155/304 (50%), Positives = 216/304 (71%), Gaps = 8/304 (2%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +++QQL+NGLT+GS Y LIAIGYTMVYGIIGMINFAHG+++M+G + A IV  IA     
Sbjct: 6   HYLQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIV--IAGLTML 63

Query: 63  GIP-VALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQV 121
           G+  + LL++     ++++   + + IERVAYRPLRGS RL PLI+AIGMSI L N + +
Sbjct: 64  GLDSLPLLIIGAFAASIIVASAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNEVLL 123

Query: 122 TQGPRNKPIPSMVTESYHFG-----AITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176
            Q  ++K IP+++  +  FG      + +S  Q++I VVT  +++     ++K+ LGRA 
Sbjct: 124 AQDSKDKAIPNLIPGNLVFGESTMNGVVISYMQVLIFVVTIAVMYGLTMFISKSRLGRAC 183

Query: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236
           RA  +D KMA LLG++ +  I++TF++GA LAAVA  +  M YGV +   GF+ G+KAFT
Sbjct: 184 RACAEDIKMANLLGINTNNIIALTFVIGATLAAVAAVLLGMQYGVINPHIGFLAGIKAFT 243

Query: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPE 296
           AAVLGGIGS+PGA+LGGL++G+ E+  +  F   YKDV AF +L  VL+F+PTGILGRPE
Sbjct: 244 AAVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFSLLVLVLLFRPTGILGRPE 303

Query: 297 VEKV 300
           VEKV
Sbjct: 304 VEKV 307